Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35123 | Canola | plastid | 97.65 | 98.28 |
| CDX96804 | Canola | plastid | 90.19 | 90.0 |
| CDX83939 | Canola | cytosol, plastid, vacuole | 89.34 | 89.34 |
| AT1G16860.1 | Thale cress | cytosol, mitochondrion, plastid, vacuole | 88.27 | 87.34 |
| CDY14586 | Canola | plastid | 83.37 | 83.01 |
| CDX87427 | Canola | mitochondrion, plastid, vacuole | 82.73 | 82.91 |
| CDX83594 | Canola | plastid | 83.16 | 82.8 |
| CDX88486 | Canola | mitochondrion, plastid, vacuole | 82.09 | 82.27 |
| CDY26883 | Canola | mitochondrion, plastid, vacuole | 81.88 | 81.53 |
| KRH46999 | Soybean | plastid | 73.56 | 72.18 |
| KRH44657 | Soybean | plastid | 72.92 | 71.55 |
| KRH09609 | Soybean | plastid | 71.64 | 71.04 |
| PGSC0003DMT400023759 | Potato | cytosol, mitochondrion, plasma membrane, plastid | 71.86 | 70.5 |
| KRH23708 | Soybean | plastid | 71.64 | 69.71 |
| Solyc03g123920.2.1 | Tomato | plastid | 64.82 | 68.62 |
| EES12814 | Sorghum | plastid | 69.94 | 68.19 |
| Os08t0230200-01 | Rice | cytosol, plastid | 70.15 | 68.12 |
| Zm00001d026258_P001 | Maize | cytosol, plastid, vacuole | 69.94 | 68.05 |
| VIT_09s0018g01240.t01 | Wine grape | plastid | 69.94 | 67.91 |
| Zm00001d050191_P003 | Maize | plasma membrane | 66.95 | 65.69 |
| KXG24772 | Sorghum | cytosol, plasma membrane, plastid | 66.74 | 65.48 |
| HORVU7Hr1G061070.1 | Barley | cytosol, plasma membrane, plastid | 66.52 | 64.73 |
| Os04t0606500-01 | Rice | plasma membrane | 66.52 | 64.73 |
| Zm00001d024364_P001 | Maize | plasma membrane | 66.74 | 63.23 |
| TraesCS2D01G429500.1 | Wheat | cytosol, plasma membrane, plastid | 64.61 | 62.73 |
| TraesCS2A01G431500.2 | Wheat | cytosol, plasma membrane, plastid | 64.61 | 62.73 |
| Zm00001d002391_P005 | Maize | cytosol, plasma membrane, plastid | 69.51 | 62.33 |
| HORVU2Hr1G100660.2 | Barley | cytosol, plasma membrane, plastid | 64.18 | 62.32 |
| TraesCS2B01G453000.2 | Wheat | cytosol, plasma membrane, plastid | 64.18 | 62.32 |
| TraesCS7D01G282000.3 | Wheat | mitochondrion | 66.1 | 62.12 |
| TraesCS7A01G283600.2 | Wheat | mitochondrion | 66.1 | 62.12 |
| TraesCS2D01G429600.1 | Wheat | cytosol, nucleus, plastid | 57.57 | 61.78 |
| TraesCS2A01G431600.1 | Wheat | cytosol, nucleus, plastid | 57.14 | 61.33 |
| TraesCS2B01G453100.1 | Wheat | cytosol, nucleus, plastid | 57.14 | 61.33 |
| HORVU2Hr1G100700.2 | Barley | plastid | 56.29 | 60.41 |
| TraesCS7B01G176900.2 | Wheat | plasma membrane | 66.52 | 59.54 |
| CDX82929 | Canola | cytosol, plasma membrane, plastid | 47.12 | 50.11 |
| CDX94089 | Canola | cytosol, plasma membrane, plastid | 47.12 | 50.0 |
| CDX79143 | Canola | cytosol, plasma membrane, plastid | 46.91 | 49.66 |
| CDX98741 | Canola | cytosol, plasma membrane, plastid | 46.7 | 49.66 |
| CDY33180 | Canola | cytosol | 15.56 | 49.32 |
| CDY16692 | Canola | cytosol, plasma membrane, plastid | 44.78 | 49.07 |
| CDX94532 | Canola | cytosol, plasma membrane, plastid | 44.35 | 48.71 |
| GSMUA_Achr3P28220_001 | Banana | mitochondrion | 8.96 | 9.17 |
| GSMUA_Achr4P20140_001 | Banana | mitochondrion, plasma membrane, plastid | 7.89 | 8.94 |
Protein Annotations
| EnsemblPlants:CDY40028 | EnsemblPlantsGene:GSBRNA2T00068930001 | GO:A0A078HTI5 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33709 | PANTHER:PTHR33709:SF9 | ProteinID:CDY40028 | ProteinID:CDY40028.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EDC620 | UniProt:A0A078HTI5 | MapMan:21.1.1.3.1 | : | : | : |
Description
BnaC05g12870DBnaC05g12870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTI5]
Coordinates
chrLK032462:-:165247..167883
Molecular Weight (calculated)
50274.4 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.164
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRYPSHQL GNGLFVSGRP EQPKERPPTM SSVAMPYTGG DIKKSGELGK MFEIPTDGSK SRKSGPIPGA PSRSGSFAQS GQGAPNASNA RMSGSLASAA
101: GSLSMKKTNS GPLSKHGEPL KKSSGPQSGG GTRQNSGPIP VLPATGLITS GPLNSSGAPR KVSGPLDSSG SLKTHMPSVV VHNPAVTTLG PPDDFSSLKS
201: FPKPVLWLIV LIFIMGFLAG GFILGAVHNP MLLIVVAIFF AVVATLFIWN VCWGRRGVVD FVARYPDADL RTAKNGQYVK VTGVVTCGNV PLESSYQRVP
301: RCVYTSTCLY EYRGWGSKPA NSSHRLFTWG LRSSERHVVD FYISDFQSGL RALVKTGNGA KVTPLVDDSA VVDFKHGNEQ MSPDFVHWLK RKNLSSDDRI
401: MRLKEVYIKE GSTVSVIGVV QRNDNVLMIV PPSEPLAAGW QWRRCTFPTT LEGVVLRCED SSNVDAIPV
101: GSLSMKKTNS GPLSKHGEPL KKSSGPQSGG GTRQNSGPIP VLPATGLITS GPLNSSGAPR KVSGPLDSSG SLKTHMPSVV VHNPAVTTLG PPDDFSSLKS
201: FPKPVLWLIV LIFIMGFLAG GFILGAVHNP MLLIVVAIFF AVVATLFIWN VCWGRRGVVD FVARYPDADL RTAKNGQYVK VTGVVTCGNV PLESSYQRVP
301: RCVYTSTCLY EYRGWGSKPA NSSHRLFTWG LRSSERHVVD FYISDFQSGL RALVKTGNGA KVTPLVDDSA VVDFKHGNEQ MSPDFVHWLK RKNLSSDDRI
401: MRLKEVYIKE GSTVSVIGVV QRNDNVLMIV PPSEPLAAGW QWRRCTFPTT LEGVVLRCED SSNVDAIPV
001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
Arabidopsis Description
Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.