CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96804	Canola	plastid	97.44	97.23
CDY40028	Canola	plastid	89.34	89.34
CDY35123	Canola	plastid	88.49	89.06
AT1G16860.1	Thale cress	cytosol, mitochondrion, plastid, vacuole	89.98	89.03
CDX87427	Canola	mitochondrion, plastid, vacuole	83.8	83.97
CDX88486	Canola	mitochondrion, plastid, vacuole	83.37	83.55
CDY14586	Canola	plastid	83.58	83.23
CDX83594	Canola	plastid	83.37	83.01
CDY26883	Canola	mitochondrion, plastid, vacuole	82.09	81.74
KRH46999	Soybean	plastid	73.99	72.59
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	73.77	72.38
KRH44657	Soybean	plastid	73.77	72.38
KRH09609	Soybean	plastid	72.49	71.88
KRH23708	Soybean	plastid	73.13	71.16
Solyc03g123920.2.1	Tomato	plastid	65.88	69.75
EES12814	Sorghum	plastid	71.22	69.44
Os08t0230200-01	Rice	cytosol, plastid	71.43	69.36
Zm00001d026258_P001	Maize	cytosol, plastid, vacuole	71.0	69.09
VIT_09s0018g01240.t01	Wine grape	plastid	69.94	67.91
Zm00001d050191_P003	Maize	plasma membrane	68.02	66.74
KXG24772	Sorghum	cytosol, plasma membrane, plastid	67.8	66.53
Os04t0606500-01	Rice	plasma membrane	67.16	65.35
HORVU7Hr1G061070.1	Barley	cytosol, plasma membrane, plastid	66.95	65.15
Zm00001d024364_P001	Maize	plasma membrane	67.38	63.84
TraesCS2D01G429500.1	Wheat	cytosol, plasma membrane, plastid	65.46	63.56
TraesCS2A01G431500.2	Wheat	cytosol, plasma membrane, plastid	65.46	63.56
Zm00001d002391_P005	Maize	cytosol, plasma membrane, plastid	70.79	63.48
TraesCS2B01G453000.2	Wheat	cytosol, plasma membrane, plastid	65.25	63.35
HORVU2Hr1G100660.2	Barley	cytosol, plasma membrane, plastid	65.03	63.15
TraesCS7D01G282000.3	Wheat	mitochondrion	66.52	62.53
TraesCS7A01G283600.2	Wheat	mitochondrion	66.52	62.53
TraesCS2D01G429600.1	Wheat	cytosol, nucleus, plastid	58.21	62.47
TraesCS2A01G431600.1	Wheat	cytosol, nucleus, plastid	57.57	61.78
TraesCS2B01G453100.1	Wheat	cytosol, nucleus, plastid	57.57	61.78
HORVU2Hr1G100700.2	Barley	plastid	56.08	60.18
TraesCS7B01G176900.2	Wheat	plasma membrane	66.95	59.92
CDX82929	Canola	cytosol, plasma membrane, plastid	47.76	50.79
CDY16692	Canola	cytosol, plasma membrane, plastid	46.27	50.7
CDX98741	Canola	cytosol, plasma membrane, plastid	47.55	50.57
CDX94089	Canola	cytosol, plasma membrane, plastid	47.55	50.45
CDX94532	Canola	cytosol, plasma membrane, plastid	45.84	50.35
CDX79143	Canola	cytosol, plasma membrane, plastid	47.55	50.34
CDY33180	Canola	cytosol	15.78	50.0
GSMUA_Achr3P28220_001	Banana	mitochondrion	9.17	9.39
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	7.89	8.94

Protein Annotations

EnsemblPlants:CDX83939	EnsemblPlantsGene:GSBRNA2T00139718001	GO:A0A078D6F1	PANTHER:PTHR33709	PANTHER:PTHR33709:SF9	ProteinID:CDX83939
ProteinID:CDX83939.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE56A7	MapMan:21.1.1.3.1	:

Description

BnaC08g17060D

Coordinates

chrLK031834:-:1333457..1335983

Molecular Weight (calculated)

50069.9 Da

IEP (calculated)

10.265

GRAVY (calculated)

-0.175

Length

469 amino acids

Sequence
(BLAST)

001: MGSRYPSHQL GNGLFVSGRP EQPKERPPTM SSTAMPYTGG DIKKSGELGK MFIPTDGTKS RKSGPIPGAP SRSGSFAGNA QSGPGAPNAT GRMSGSLASS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQHSGPI PVLPATGLIT SGPLNSSGAP RKVSGPLDSS GSLKTHMASV VHNQAVTTLG SQDDFSSLKS
201: FPKSVLWLVV LIFIMGFLAG GFILGAVHNP MLLIVVAVFF TVVAALFVWN SCWGRRGITD FIARYPDADL RTAKNGQFVK VTGVVTCGNV PLESSFQRVP
301: RCVYTSTCLY EYRGWGSKPA NSSHRCFTWG LRSSERHVVD FYISDFQSGL RALVKTGNGA KVTPVVDDSV VIDYKHGSEK ASPDFVRWLR QKNLSSDDRI
401: MRLKEGYIKE GSTVSVIGVV HRNDNVLMIV PSSEPITAGW QWSRCTFPTS LEGIVLRCED SSNVDAIPV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.