Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P28220_001 | Banana | mitochondrion | 65.46 | 59.17 |
| KRH44594 | Soybean | cytosol, plasma membrane, plastid | 9.66 | 11.4 |
| GSMUA_Achr9P13890_001 | Banana | plastid | 8.45 | 9.02 |
| Bra008384.1-P | Field mustard | plastid | 8.94 | 8.83 |
| KRH09609 | Soybean | plastid | 9.66 | 8.46 |
| KRH46999 | Soybean | plastid | 9.66 | 8.37 |
| KRH23708 | Soybean | plastid | 9.66 | 8.3 |
| GSMUA_Achr1P10460_001 | Banana | plastid | 8.45 | 8.27 |
| KRH47297 | Soybean | cytosol, plasma membrane, plastid | 9.66 | 8.26 |
| KRH44657 | Soybean | plastid | 9.42 | 8.16 |
| GSMUA_Achr7P04950_001 | Banana | cytosol, plasma membrane, plastid | 8.45 | 8.1 |
| AT1G16860.1 | Thale cress | cytosol, mitochondrion, plastid, vacuole | 9.18 | 8.02 |
| PGSC0003DMT400023759 | Potato | cytosol, mitochondrion, plasma membrane, plastid | 9.18 | 7.95 |
| CDY35123 | Canola | plastid | 8.94 | 7.94 |
| Bra026021.1-P | Field mustard | plastid | 8.94 | 7.94 |
| AT1G78880.1 | Thale cress | plastid | 8.94 | 7.91 |
| CDX83939 | Canola | cytosol, plastid, vacuole | 8.94 | 7.89 |
| CDY40028 | Canola | plastid | 8.94 | 7.89 |
| GSMUA_Achr5P04950_001 | Banana | cytosol, plasma membrane, plastid | 8.7 | 7.88 |
| CDX96804 | Canola | plastid | 8.94 | 7.87 |
| Bra016629.1-P | Field mustard | plastid | 8.94 | 7.87 |
| VIT_09s0018g01240.t01 | Wine grape | plastid | 9.18 | 7.87 |
| CDY26883 | Canola | mitochondrion, plastid, vacuole | 8.94 | 7.86 |
| CDY14586 | Canola | plastid | 8.94 | 7.86 |
| CDX83594 | Canola | plastid | 8.94 | 7.86 |
| GSMUA_Achr1P23590_001 | Banana | plastid | 8.7 | 7.79 |
| CDX88486 | Canola | mitochondrion, plastid, vacuole | 8.7 | 7.69 |
| CDX87427 | Canola | mitochondrion, plastid, vacuole | 8.7 | 7.69 |
| GSMUA_Achr9P22990_001 | Banana | plastid | 8.94 | 7.61 |
| GSMUA_Achr3P27840_001 | Banana | plastid | 8.94 | 7.61 |
| GSMUA_AchrUn_... | Banana | plastid | 8.21 | 7.46 |
| Bra035072.1-P | Field mustard | plasma membrane | 7.97 | 5.94 |
| Solyc03g123920.2.1 | Tomato | plastid | 4.83 | 4.51 |
| GSMUA_Achr5P19960_001 | Banana | extracellular, plasma membrane, vacuole | 0.48 | 0.69 |
| KRH44603 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P20140_001 | EnsemblPlants:GSMUA_Achr4T20140_001 | EnsemblPlantsGene:GSMUA_Achr4G20140_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33709 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000294F272 | UniProt:M0SQH7 | MapMan:35.1 |
Description
Putative Uncharacterized membrane protein At1g16860 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20140_001]
Coordinates
chr4:-:20865108..20868471
Molecular Weight (calculated)
45069.6 Da
IEP (calculated)
10.133
GRAVY (calculated)
-0.110
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGQRVAHQL SNGMVVSGLP MSPKERSPSF GSRAVPYTGG DVRKSGELGR MFDIPVGETA TASTASPRPR SGPHSGPLPR SSPSSRRTSA PPSPIPATGL
101: ITSGPARYSS RQQTPAASPA PARRRKEYGA AVTVVDGEGF VFGVSRAWRW VLVAMFVVGV ATGAFVWAAV GRPEILVGVA AAAAVVVALA VWSCVMGRME
201: VERFLRCHPN SSIDPRNLPI GKLVKITGHV TCGSIPLEAS YQKISRCIYI STDIYEYRGW SGLPAKPNLM HFSWGLRNSE RHISDFYISD SATGMRFLVR
301: AGNGAKVTAF VKPTTILDMN KEKKQLSPDF LSWLMEHNLS SDDRIMRLKE GYIKEGHTAS VMGILKKHEN LIMIDPPPDM VSTGCRWTRC FLPLFVEGLI
401: LIGDERPDEV VYQV
101: ITSGPARYSS RQQTPAASPA PARRRKEYGA AVTVVDGEGF VFGVSRAWRW VLVAMFVVGV ATGAFVWAAV GRPEILVGVA AAAAVVVALA VWSCVMGRME
201: VERFLRCHPN SSIDPRNLPI GKLVKITGHV TCGSIPLEAS YQKISRCIYI STDIYEYRGW SGLPAKPNLM HFSWGLRNSE RHISDFYISD SATGMRFLVR
301: AGNGAKVTAF VKPTTILDMN KEKKQLSPDF LSWLMEHNLS SDDRIMRLKE GYIKEGHTAS VMGILKKHEN LIMIDPPPDM VSTGCRWTRC FLPLFVEGLI
401: LIGDERPDEV VYQV
001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
Arabidopsis Description
Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.