Factsheet for VIT_09s0018g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00020.t01	Wine grape	plastid	83.44	83.78
KRH44603	Soybean	cytosol	23.19	83.58
KRH46999	Soybean	plastid	81.57	82.43
KRH44657	Soybean	plastid	81.37	82.22
KRH09609	Soybean	plastid	79.3	80.97
KRH47297	Soybean	cytosol, plasma membrane, plastid	80.54	80.37
KRH23708	Soybean	plastid	79.71	79.88
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	78.47	79.29
KRH44594	Soybean	cytosol, plasma membrane, plastid	57.35	78.92
Solyc03g123920.2.1	Tomato	plastid	71.22	77.65
AT1G78880.1	Thale cress	plastid	68.32	70.51
CDX96804	Canola	plastid	68.32	70.21
Bra016629.1-P	Field mustard	plastid	68.12	70.0
CDY40028	Canola	plastid	67.91	69.94
CDX83939	Canola	cytosol, plastid, vacuole	67.91	69.94
CDY35123	Canola	plastid	67.29	69.74
Bra026021.1-P	Field mustard	plastid	67.29	69.74
CDX87427	Canola	mitochondrion, plastid, vacuole	67.08	69.23
AT1G16860.1	Thale cress	cytosol, mitochondrion, plastid, vacuole	67.7	68.99
CDX88486	Canola	mitochondrion, plastid, vacuole	66.67	68.8
CDY14586	Canola	plastid	67.08	68.79
CDX83594	Canola	plastid	67.08	68.79
CDY26883	Canola	mitochondrion, plastid, vacuole	66.05	67.73
Bra008384.1-P	Field mustard	plastid	57.35	66.11
Bra035072.1-P	Field mustard	plasma membrane	65.84	57.19
VIT_15s0048g02880.t01	Wine grape	plasma membrane	26.5	39.14
VIT_14s0060g00070.t01	Wine grape	nucleus	4.55	24.72
VIT_13s0019g03150.t01	Wine grape	plastid	8.49	15.3
GSMUA_Achr3P28220_001	Banana	mitochondrion	9.11	9.61
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	7.87	9.18

Protein Annotations

EntrezGene:100260314	wikigene:100260314	MapMan:21.1.1.3.1	EMBL:AM433610	ProteinID:CAN82541	ProteinID:CAN82541.1
ProteinID:CCB49695	ProteinID:CCB49695.1	UniProt:F6HBT0	EMBL:FN595513	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100260314	wikigene:LOC100260314	PANTHER:PTHR33709	PANTHER:PTHR33709:SF4	TMHMM:TMhelix
UniParc:UPI00015CA9D3	ArrayExpress:VIT_09s0018g01240	EnsemblPlantsGene:VIT_09s0018g01240	EnsemblPlants:VIT_09s0018g01240.t01	unigene:Vvi.14184	RefSeq:XP_002269374
RefSeq:XP_002269374.1	RefSeq:XP_010655125.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:18140935..18143963

Molecular Weight (calculated)

51828.8 Da

IEP (calculated)

9.817

GRAVY (calculated)

-0.192

Length

483 amino acids

Sequence
(BLAST)

001: MGSRIPSHQL SNGLYVSGRP EQQKERMPTM SSTAMPYTGG DIKKSGELAK MFDIQMEGSK TRKSGPLNSA PSRTGSFGGA ASHSGPVTSN AAARAVYTNS
101: GPVSSAGISG SASVKRSNSG PLNRQGDPAK KSSGPQSGGG TPAARQNSGP LLPTTGLITS GPISSGPLNS SGAPRKVSGP QDSMGSLKTH SISIAHNPAV
201: TTLSQDDDFS FKRNFPKLIL WSIILIFVMG FIAGGFILGA VHNAILLVVV VVLFGIVVAL FTWNTCWGRR ATIGFISHYP DSELRTAKDG QYVKVSGVVT
301: CGNVPLESSF QKAPRCVYTS TSLYEYRGWD SKAANPTHRR FTWGLRSLES HVVDFYISDF QSGLRALVKT GYGARVTPYV DDSFVVDVNA ENKELSPEFI
401: RWLGERNLSS DDRMMRLKEG YVKEGSTVSV MGVVQRNENV LMIVPPPEPF TTGCQWTKCI FPASLEGIVL RCEDTSKIDV IPV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.