Factsheet for Solyc03g123920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
plasma membrane 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	93.91	87.03
KRH44603	Soybean	cytosol	24.83	82.09
KRH44657	Soybean	plastid	78.1	72.38
KRH46999	Soybean	plastid	77.65	71.97
KRH47297	Soybean	cytosol, plasma membrane, plastid	78.1	71.49
KRH09609	Soybean	plastid	76.07	71.25
VIT_09s0018g01240.t01	Wine grape	plastid	77.65	71.22
KRH23708	Soybean	plastid	76.52	70.33
Solyc12g017450.1.1	Tomato	cytosol, plasma membrane, plastid	71.78	67.37
AT1G78880.1	Thale cress	plastid	71.11	67.31
KRH44594	Soybean	cytosol, plasma membrane, plastid	53.27	67.24
CDX96804	Canola	plastid	70.2	66.17
Bra016629.1-P	Field mustard	plastid	70.2	66.17
CDX83939	Canola	cytosol, plastid, vacuole	69.75	65.88
CDX88486	Canola	mitochondrion, plastid, vacuole	69.07	65.38
CDX87427	Canola	mitochondrion, plastid, vacuole	69.07	65.38
CDX83594	Canola	plastid	69.3	65.18
CDY35123	Canola	plastid	68.4	65.02
Bra026021.1-P	Field mustard	plastid	68.4	65.02
AT1G16860.1	Thale cress	cytosol, mitochondrion, plastid, vacuole	69.53	64.98
CDY14586	Canola	plastid	69.07	64.97
CDY40028	Canola	plastid	68.62	64.82
CDY26883	Canola	mitochondrion, plastid, vacuole	67.95	63.91
Bra008384.1-P	Field mustard	plastid	58.47	61.81
Bra035072.1-P	Field mustard	plasma membrane	69.07	55.04
Solyc04g014680.2.1	Tomato	plastid	45.82	46.77
Solyc11g012040.1.1	Tomato	plastid	43.79	44.8
Solyc01g096300.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	24.38	38.57
GSMUA_Achr3P28220_001	Banana	mitochondrion	6.32	6.11
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	4.51	4.83

Protein Annotations

EnsemblPlants:Solyc03g123920.2.1	EnsemblPlantsGene:Solyc03g123920.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33709
PANTHER:PTHR33709:SF4	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002765DFD	UniProt:K4BN90	MapMan:21.1.1.3.1

Description

No Description!

Coordinates

chr3:-:70615141..70621449

Molecular Weight (calculated)

47587.1 Da

IEP (calculated)

9.892

GRAVY (calculated)

-0.096

Length

443 amino acids

Sequence
(BLAST)

001: MPYTGGDIKK SGELGKMFDI PVDGSKSRKS APITTAPSRT SHSGPINSNT PSARTSYSTS GPISSSGMPA SLSTKKSNSG PLTKHGEPIK KSSGPQSGGV
101: TPTGRQNSGP QPPLLPATGL ITSGPISSGP LNSSGAPRKI SGPLDSAKIH APSLVNSQAV TTLNQNDVYS FKRSFPKPIL WAMVLLFLMG FIAGGFILAA
201: VHNAILVIVV VVLFGIVAAL FLWNSCWGGS AIVRFITRYP DSELRTAKNG EYVKVSGVVT CGNVPLESSF QKVPRCVYSS TSLYEYRGWD SKAANPTHRR
301: FTWGVRSSER HVVDFYISDF QSGLRALVKT GYGAKVTPYV DESVVVDVDP LNSELSPEFI RWLRERSLSS DDRIMRLKEG YIKEGSTVSV IGVVQRNENV
401: LMIVPPPEAF TTGCQWLKCI FPASLEGIVL RCEDASKVDA IPV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.