Factsheet for Solyc11g012040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034711	Potato	mitochondrion, plastid	96.07	96.07
Solyc04g014680.2.1	Tomato	plastid	66.74	66.59
KRH11512	Soybean	plastid	60.97	63.31
KRH36527	Soybean	plastid	60.05	61.9
CDX82929	Canola	cytosol, plasma membrane, plastid	57.04	56.01
Bra013607.1-P	Field mustard	cytosol, plasma membrane, plastid	57.27	55.98
CDX79143	Canola	cytosol, plasma membrane, plastid	57.27	55.98
CDX94089	Canola	cytosol, plasma membrane, plastid	56.81	55.66
AT4G22290.1	Thale cress	cytosol, plasma membrane, plastid	56.81	55.28
Bra019387.1-P	Field mustard	cytosol, plasma membrane, plastid	56.35	55.2
CDX98741	Canola	cytosol, plasma membrane, plastid	56.12	55.1
CDY16692	Canola	cytosol, plasma membrane, plastid	52.19	52.8
Bra029474.1-P	Field mustard	cytosol, plasma membrane, plastid	48.27	52.51
CDX94532	Canola	cytosol, plasma membrane, plastid	51.5	52.22
Solyc12g017450.1.1	Tomato	cytosol, plasma membrane, plastid	49.88	45.76
Solyc03g123920.2.1	Tomato	plastid	44.8	43.79
Solyc01g096300.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	22.86	35.36

Protein Annotations

EnsemblPlants:Solyc11g012040.1.1	EnsemblPlantsGene:Solyc11g012040.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33709
PANTHER:PTHR33709:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769DE7	UniProt:K4D609	MapMan:35.1

Description

No Description!

Coordinates

chr11:-:4974117..4979592

Molecular Weight (calculated)

46874.8 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.122

Length

433 amino acids

Sequence
(BLAST)

001: MSSRIGSHQL KNGLFVSGRP EQQKERPTAT SRAVPYTGGD VKKSGELGKM YGIDMSGGDH HAGPPTLKKP SSRASSSSQH NSGSLRSGPN SGQMGGHKSS
101: NSGPIPKKPS SGSGPIQPTG LIYSGPLSSS AGRRSGQLEP TISFKKMVYG SSVTSLSGDI KMGFNVSRVA MWVLFVVILM ALMAGAFVMA TVKKFVILVA
201: VGAAVAPILM ILLWNYAYKE RGLVEFLRRY PDAELRSAVN GQFVKVTGVV TCGSIPLETS FQRVPRCVYA STELHEYKAC IGNCANPRQR SFSWGRRHTE
301: NYVGDFYISD FQTGLRALVK AGYGAKVAPF VKPKTVVDVT SDSELSPNFL RWLADRNLSS DDHVMRLKEG YIKEGSTISV MGVVMRQENV LMIVPPPEPI
401: SIGCQWLRCL LPTYVEGLIL TCDDIQDGDV IPV

Best Arabidopsis Sequence Match ( AT4G22290.1 )
(BLAST)

001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV

Arabidopsis Description

At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.