CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16692	Canola	cytosol, plasma membrane, plastid	95.08	94.86
Bra029474.1-P	Field mustard	cytosol, plasma membrane, plastid	87.35	93.72
CDX98741	Canola	cytosol, plasma membrane, plastid	73.54	71.2
CDX94089	Canola	cytosol, plasma membrane, plastid	73.07	70.59
CDX82929	Canola	cytosol, plasma membrane, plastid	72.13	69.84
CDX79143	Canola	cytosol, plasma membrane, plastid	71.9	69.3
KRH11512	Soybean	plastid	59.02	60.43
KRH36527	Soybean	plastid	58.31	59.29
Solyc04g014680.2.1	Tomato	plastid	56.21	55.3
Solyc11g012040.1.1	Tomato	plastid	52.22	51.5
PGSC0003DMT400034711	Potato	mitochondrion, plastid	51.99	51.27
PGSC0003DMT400060565	Potato	plastid	56.91	47.18
CDX83939	Canola	cytosol, plastid, vacuole	50.35	45.84
CDX96804	Canola	plastid	49.88	45.32
CDX87427	Canola	mitochondrion, plastid, vacuole	49.41	45.09
CDX88486	Canola	mitochondrion, plastid, vacuole	49.18	44.87
CDX83594	Canola	plastid	49.41	44.8
CDY14586	Canola	plastid	49.41	44.8
CDY26883	Canola	mitochondrion, plastid, vacuole	49.18	44.59
CDY35123	Canola	plastid	48.48	44.42
CDY40028	Canola	plastid	48.71	44.35
GSMUA_Achr5P19960_001	Banana	extracellular, plasma membrane, vacuole	24.12	35.64
VIT_15s0048g02880.t01	Wine grape	plasma membrane	25.53	33.33
CDY33180	Canola	cytosol	11.48	33.11
Zm00001d025966_P001	Maize	golgi, peroxisome, plasma membrane	23.89	31.88
EES11199	Sorghum	cytosol, endoplasmic reticulum, golgi	24.36	31.42
Os04t0541900-00	Rice	cytosol, golgi, peroxisome	23.18	31.13
TraesCS2B01G407700.1	Wheat	golgi, peroxisome, vacuole	23.18	30.94
TraesCS2D01G387400.1	Wheat	golgi, plasma membrane, vacuole	22.48	30.38
HORVU2Hr1G092730.3	Barley	endoplasmic reticulum	20.84	30.27
TraesCS2A01G389500.1	Wheat	golgi, plasma membrane, vacuole	22.48	30.19
Zm00001d046644_P001	Maize	nucleus, plasma membrane, plastid	6.56	7.89
KXG20435	Sorghum	nucleus, plasma membrane, plastid	6.32	6.62
TraesCS7B01G290800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	5.85	6.13
TraesCS7D01G384800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	5.85	6.1
TraesCS7A01G388900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	5.62	5.85
HORVU0Hr1G022000.9	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX94532	EnsemblPlantsGene:GSBRNA2T00157774001	GO:A0A078E078	PANTHER:PTHR33709	PANTHER:PTHR33709:SF2	ProteinID:CDX94532
ProteinID:CDX94532.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDE872	MapMan:35.1	:

Description

BnaC09g23040D

Coordinates

chrLK031882:+:818654..821277

Molecular Weight (calculated)

45858.3 Da

IEP (calculated)

10.236

GRAVY (calculated)

-0.078

Length

427 amino acids

Sequence
(BLAST)

001: MASRLQSHQL PSGLYVSGKL EQPKETRPPT MAARAMPYTG GDIKKSGELG RMFDISFADP TSFHGGGAAR PPPTRVHSSS ASSSNPNNGH GRSGSQSGPV
101: RKSSGPLSQL QPTGLITSGP LNSSGQIGSG SRRSGPLDHH QTSNLRPSTK PKYGSAVTVL NSDPVRVGLK VPKALVWAVV VVAVTALLIG TFLAVAVKKP
201: LIIVAIAAAI VPAAVVFVWN CVWRRRGLLG FIKNYPNAVL RGAIDGQFIK VTGVVTCGST PLESSYQKIP RCVYVSTELY EYKGCSWGSR HAERYVSDFY
301: ISDFQSGLRA LVKAGYGSKV SPFVVPETVA NVTVQTKDLS PSFLQWLADR SLSNDSRAMR LKEGYIKEGS TVSVMGMVRR HDNVLMIIPP AESVATGCKW
401: WRCLFPAYVE GLIITCDENQ NADVIPV

Best Arabidopsis Sequence Match ( AT4G22290.1 )
(BLAST)

001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV

Arabidopsis Description

At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.