Factsheet for Os04t0541900-00

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 2
golgi 3
peroxisome 2
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	golgi, mitochondrion, nucleus, peroxisome, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G387400.1	Wheat	golgi, plasma membrane, vacuole	80.5	81.01
TraesCS2A01G389500.1	Wheat	golgi, plasma membrane, vacuole	80.5	80.5
TraesCS2B01G407700.1	Wheat	golgi, peroxisome, vacuole	79.56	79.06
EES11199	Sorghum	cytosol, endoplasmic reticulum, golgi	78.93	75.83
Zm00001d025966_P001	Maize	golgi, peroxisome, plasma membrane	72.96	72.5
HORVU2Hr1G092730.3	Barley	endoplasmic reticulum	64.47	69.73
GSMUA_Achr5P19960_001	Banana	extracellular, plasma membrane, vacuole	42.45	46.71
PGSC0003DMT400000687	Potato	endoplasmic reticulum, plasma membrane, plastid	38.99	44.29
Solyc01g096300.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	38.36	43.57
VIT_15s0048g02880.t01	Wine grape	plasma membrane	41.51	40.37
Os08t0230100-00	Rice	cytosol, extracellular	6.92	28.57
KRH11512	Soybean	plastid	36.48	27.82
KRH36527	Soybean	plastid	36.16	27.38
CDX98741	Canola	cytosol, plasma membrane, plastid	36.48	26.3
Os08t0230200-01	Rice	cytosol, plastid	39.94	26.29
CDX94089	Canola	cytosol, plasma membrane, plastid	36.48	26.24
Bra019387.1-P	Field mustard	cytosol, plasma membrane, plastid	36.48	26.24
Os04t0606500-01	Rice	plasma membrane	39.62	26.14
AT4G22290.1	Thale cress	cytosol, plasma membrane, plastid	35.53	25.39
CDX82929	Canola	cytosol, plasma membrane, plastid	34.59	24.94
Bra013607.1-P	Field mustard	cytosol, plasma membrane, plastid	34.59	24.83
CDX79143	Canola	cytosol, plasma membrane, plastid	34.59	24.83
Bra029474.1-P	Field mustard	cytosol, plasma membrane, plastid	30.5	24.37
CDY16692	Canola	cytosol, plasma membrane, plastid	31.76	23.6
CDX94532	Canola	cytosol, plasma membrane, plastid	31.13	23.18

Protein Annotations

EnsemblPlants:Os04t0541900-00	EnsemblPlantsGene:Os04g0541900	EntrezGene:4336543	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33709	PANTHER:PTHR33709:SF1	ProteinID:BAS90300.1	RefSeq:XP_015634392.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0001C7E185	UniProt:A0A0P0WD06	MapMan:35.1	:	:	:

Description

Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase. (Os04t0541900-00)

Coordinates

chr4:+:27133017..27135484

Molecular Weight (calculated)

33628.6 Da

IEP (calculated)

6.355

GRAVY (calculated)

0.281

Length

318 amino acids

Sequence
(BLAST)

001: MLPGGEDGGK HRGATADEEA AATAASLNDL CATAGDAGGL PALAPFPRAA VWAVAALLAV GLGLGALVLA VVHSAALLVV AVLLSAAVVA FLLWNAAASA
101: SGRALRRFVD GLPASSLRSA TDDQLVKITG LVACGDISLI SSYEKVENCV YTSTLLRKCG RWGSEVANPK NRCSKWKLTH AERFAADFYI TDAKSGKRAL
201: VKAGHDSRVV PLIDENLLVT TSGNTELSST LRCWLDERNI PSEECQLIRL EEGYIAEGMR LSVIGILSKK DGDLMILPPP EPISTGCVFL SFLLPTYFDG
301: IVLRLVDRSY FMHNSGVS

Best Arabidopsis Sequence Match ( AT4G22290.1 )
(BLAST)

001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV

Arabidopsis Description

At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.