Factsheet for PGSC0003DMT400000687

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

plastid 4
cytosol 1
endoplasmic reticulum 3
plasma membrane 4
extracellular 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096300.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	93.93	93.93
VIT_15s0048g02880.t01	Wine grape	plasma membrane	59.29	50.76
GSMUA_Achr5P19960_001	Banana	extracellular, plasma membrane, vacuole	49.29	47.75
TraesCS2D01G387400.1	Wheat	golgi, plasma membrane, vacuole	45.0	39.87
TraesCS2A01G389500.1	Wheat	golgi, plasma membrane, vacuole	45.0	39.62
TraesCS2B01G407700.1	Wheat	golgi, peroxisome, vacuole	44.64	39.06
Os04t0541900-00	Rice	cytosol, golgi, peroxisome	44.29	38.99
Zm00001d025966_P001	Maize	golgi, peroxisome, plasma membrane	42.86	37.5
EES11199	Sorghum	cytosol, endoplasmic reticulum, golgi	43.93	37.16
PGSC0003DMT400025018	Potato	cytosol, mitochondrion, plasma membrane, plastid	39.64	23.52
PGSC0003DMT400025021	Potato	cytosol, plasma membrane, plastid	38.93	23.09
PGSC0003DMT400034711	Potato	mitochondrion, plastid	35.36	22.86
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	38.93	22.8
PGSC0003DMT400060565	Potato	plastid	37.14	20.19
HORVU0Hr1G022000.9	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400000687	EnsemblPlantsGene:PGSC0003DMG400000245	EntrezGene:102595932	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33709	PANTHER:PTHR33709:SF1	PGSC:PGSC0003DMG400000245	RefSeq:XP_006339756.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002964187	UniProt:M0ZH62	MapMan:35.1	:	:	:

Description

Cysteine-type endopeptidase/ ubiquitin thiolesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400000245]

Coordinates

chr1:-:73879922..73882746

Molecular Weight (calculated)

31317.5 Da

IEP (calculated)

9.657

GRAVY (calculated)

0.347

Length

280 amino acids

Sequence
(BLAST)

001: MNQNNFSHSN VAQSFKVPLI PSLALYLVFA LFLFGVAVSL FILVVVHNPL FFLSYLFLFA LIAAFLLWNS ISFRNNTTIL HYLRSLPDAD LTVARHGHLV
101: KITGLVSCGN VSLESSYEKV GRCVYTSTLL FECGKLGLKP ADVKEACFGW RLAYSERLST DFYITDKNSG IRAFVKAGPD SRVIPLIKES RLVTTAKNCK
201: VLASHLRKWL RDRNLSSEAR LLRLEEGYIK EGSSISVFGI LQRSNDVMVV TPPQELISTG YLWKKLLLPV DVDGLILAIP

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.