Factsheet for PGSC0003DMT400025021

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g017450.1.1	Tomato	cytosol, plasma membrane, plastid	98.52	98.52
PGSC0003DMT400025018	Potato	cytosol, mitochondrion, plasma membrane, plastid	96.61	96.61
VIT_11s0052g00020.t01	Wine grape	plastid	81.57	80.04
GSMUA_Achr1P10460_001	Banana	plastid	67.16	74.94
GSMUA_Achr5P04950_001	Banana	cytosol, plasma membrane, plastid	72.46	74.84
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	74.58	73.64
GSMUA_AchrUn_...	Banana	plastid	70.13	72.59
GSMUA_Achr9P22990_001	Banana	plastid	74.36	72.22
GSMUA_Achr9P13890_001	Banana	plastid	58.69	71.39
Os08t0230200-01	Rice	cytosol, plastid	72.88	71.22
EES12814	Sorghum	plastid	71.82	70.48
GSMUA_Achr7P04950_001	Banana	cytosol, plasma membrane, plastid	64.19	70.14
Zm00001d026258_P001	Maize	cytosol, plastid, vacuole	71.61	70.12
KXG24772	Sorghum	cytosol, plasma membrane, plastid	70.55	69.67
GSMUA_Achr3P27840_001	Banana	plastid	70.76	68.72
GSMUA_Achr1P23590_001	Banana	plastid	67.16	68.61
Zm00001d050191_P003	Maize	plasma membrane	68.64	67.78
HORVU7Hr1G061070.1	Barley	cytosol, plasma membrane, plastid	68.86	67.43
Zm00001d024364_P001	Maize	plasma membrane	69.7	66.46
Os04t0606500-01	Rice	plasma membrane	67.8	66.39
TraesCS7D01G282000.3	Wheat	mitochondrion	68.86	65.13
Zm00001d002391_P005	Maize	cytosol, plasma membrane, plastid	72.03	65.01
TraesCS7A01G283600.2	Wheat	mitochondrion	68.43	64.73
TraesCS2D01G429500.1	Wheat	cytosol, plasma membrane, plastid	65.68	64.18
HORVU2Hr1G100660.2	Barley	cytosol, plasma membrane, plastid	65.47	63.98
TraesCS2A01G431500.2	Wheat	cytosol, plasma membrane, plastid	65.47	63.98
TraesCS2B01G453000.2	Wheat	cytosol, plasma membrane, plastid	65.47	63.98
TraesCS2D01G429600.1	Wheat	cytosol, nucleus, plastid	58.26	62.93
TraesCS2B01G453100.1	Wheat	cytosol, nucleus, plastid	58.05	62.7
TraesCS2A01G431600.1	Wheat	cytosol, nucleus, plastid	57.84	62.47
TraesCS7B01G176900.2	Wheat	plasma membrane	68.86	62.02
HORVU2Hr1G100700.2	Barley	plastid	57.42	62.01
PGSC0003DMT400034711	Potato	mitochondrion, plastid	45.55	49.65
PGSC0003DMT400060565	Potato	plastid	49.36	45.24
PGSC0003DMT400000687	Potato	endoplasmic reticulum, plasma membrane, plastid	23.09	38.93

Protein Annotations

EnsemblPlants:PGSC0003DMT400025021	EnsemblPlantsGene:PGSC0003DMG402009663	EntrezGene:102582608	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33709	PANTHER:PTHR33709:SF4	PGSC:PGSC0003DMG402009663	RefSeq:XP_006344935.1	RefSeq:XP_006344936.1	RefSeq:XP_006344937.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002967F5A	UniProt:M1AKX0	MapMan:21.1.1.3.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402009663]

Coordinates

chr12:+:11102054..11107053

Molecular Weight (calculated)

51230.5 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.208

Length

472 amino acids

Sequence
(BLAST)

001: MGSRFPSHQL SSGLYVSGRP EQPKEKTPTM SSVAMPYTGG DIKKSGELGK MFVTPADGSR SRKSGPINSN APMRTGSFSG ATSHSGQLNS GNRMTSGGAP
101: GYVSMKKTNS GPLNKHGEPM KKSSGPQAGG GNVSSRQNSG PIPPILPTTG LITSGPLNSA GAPRKVSGPL DSTGSIKLQN YSVVNNQAVT RINQCDEYSF
201: RKSFPKTIFW SIILLFLMGF IAGGFILGAV HNPILLVVVV VLFAIVCVVF TWNTCYGRKA IIGFISQYPD AELRTAKDGQ FVKVSGVVTC GNVPLESSFQ
301: KVSRCVYTVT SLYEYRGWDS KSANPEHRRF SWGLRTLERH VSDFYISDFQ SGLRALVKTG YGARVTPYVE ESIVVDIDQS NRDMSPEFVR WLAQRNLSSD
401: DRIMRLKEGY IKEGSTVSVM GVVRRNDNVL MIVPPPEPLS TGCQWSKCIL PASLEGIVLR CEDSSKIDVI PV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.