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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
 plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES12814 Sorghum plastid 87.14 87.32
Zm00001d026258_P001 Maize cytosol, plastid, vacuole 87.14 87.14
Os08t0230200-01 Rice cytosol, plastid 83.82 83.64
Zm00001d002391_P005 Maize cytosol, plasma membrane, plastid 87.55 80.69
TraesCS2D01G429600.1 Wheat cytosol, nucleus, plastid 71.16 78.49
GSMUA_Achr9P22990_001 Banana plastid 79.05 78.4
TraesCS2B01G453100.1 Wheat cytosol, nucleus, plastid 70.95 78.26
TraesCS2D01G429500.1 Wheat cytosol, plasma membrane, plastid 78.01 77.85
TraesCS2B01G453000.2 Wheat cytosol, plasma membrane, plastid 78.01 77.85
HORVU2Hr1G100660.2 Barley cytosol, plasma membrane, plastid 78.01 77.85
TraesCS2A01G431600.1 Wheat cytosol, nucleus, plastid 70.54 77.8
TraesCS2A01G431500.2 Wheat cytosol, plasma membrane, plastid 77.8 77.64
GSMUA_Achr7P04950_001 Banana cytosol, plasma membrane, plastid 67.43 75.23
GSMUA_Achr1P10460_001 Banana plastid 65.98 75.18
GSMUA_AchrUn_... Banana plastid 70.95 75.0
HORVU2Hr1G100700.2 Barley plastid 67.43 74.37
GSMUA_Achr3P27840_001 Banana plastid 74.27 73.66
KRH44603 Soybean cytosol 20.33 73.13
GSMUA_Achr1P23590_001 Banana plastid 69.92 72.94
VIT_11s0052g00020.t01 Wine grape plastid 72.61 72.77
KRH46999 Soybean plastid 71.78 72.38
KRH44657 Soybean plastid 71.58 72.18
KRH09609 Soybean plastid 70.75 72.09
KRH23708 Soybean plastid 70.95 70.95
KRH47297 Soybean cytosol, plasma membrane, plastid 69.29 69.01
AT1G78880.1 Thale cress plastid 66.39 68.38
Solyc12g017450.1.1 Tomato cytosol, plasma membrane, plastid 66.6 68.01
PGSC0003DMT400025018 Potato cytosol, mitochondrion, plasma membrane, plastid 66.6 68.01
PGSC0003DMT400025021 Potato cytosol, plasma membrane, plastid 66.39 67.8
CDX96804 Canola plastid 65.98 67.66
Bra016629.1-P Field mustard plastid 65.77 67.45
CDX83939 Canola cytosol, plastid, vacuole 65.35 67.16
CDY35123 Canola plastid 64.73 66.95
Bra026021.1-P Field mustard plastid 64.52 66.74
KRH44594 Soybean cytosol, plasma membrane, plastid 48.55 66.67
CDY40028 Canola plastid 64.73 66.52
CDX87427 Canola mitochondrion, plastid, vacuole 64.32 66.24
AT1G16860.1 Thale cress cytosol, mitochondrion, plastid, vacuole 64.94 66.03
CDX83594 Canola plastid 64.52 66.03
CDY14586 Canola plastid 64.52 66.03
CDX88486 Canola mitochondrion, plastid, vacuole 63.9 65.81
CDY26883 Canola mitochondrion, plastid, vacuole 63.9 65.39
Bra008384.1-P Field mustard plastid 55.39 63.72
Os08t0230100-00 Rice cytosol, extracellular 9.54 59.74
Bra035072.1-P Field mustard plasma membrane 63.07 54.68
Os04t0541900-00 Rice cytosol, golgi, peroxisome 26.14 39.62
Protein Annotations
EMBL:AK068251EnsemblPlants:Os04t0606500-01EnsemblPlantsGene:Os04g0606500EntrezGene:4336918GO:GO:0005575GO:GO:0016020
GO:GO:0016021PANTHER:PTHR33709PANTHER:PTHR33709:SF4ProteinID:BAF15715.1ProteinID:BAS90894.1ProteinID:CAD41777.2
RefSeq:XP_015637183.1RefSeq:XP_015637184.1SEG:segTMHMM:TMhelixUniParc:UPI000021C863UniProt:Q7X8W5
MapMan:21.1.1.3.1:::::
Description
Similar to OSIGBa0113I13.4 protein. (Os04t0606500-01)
Coordinates
chr4:-:30642129..30645845
Molecular Weight (calculated)
51640.7 Da
IEP (calculated)
9.865
GRAVY (calculated)
-0.190
Length
482 amino acids
Sequence
(BLAST)
001: MGSRFPSHQL SNGLYVSGRP EQPKEKAPTI CSTAMPYTGG DIKKSGELGK MFELHAVKSR KSGPLSNAPS RNASFGGAAS NSGPVPNAGD RSNYSGSLSS
101: SVPGASGSAR AKSSSGPLNK HGEPVKRSSG PQSGGVTPMA RQNSGPLPPM LPTTGLITSG PITSGPLNSS GAQRKVSGPL DSAASKKTRA TSFSHNQAVT
201: KITTEDSYSI TGSLSKLILG AVGVLFVLGL IAGILILSAV HNAILLIVVL VLFGFVAALF IWNACWARRG VIGFVDRYSD ADLRTAKDGQ YIKVTGVVTC
301: GNFPLESSYQ RVPRCVYTST TLHEYRGWDS KAANTQHHRF TWGLRSMEQH AVDFYISDFQ SGLRALVKAG YGARVTPFVD ESVIIDIDPD NKDMSPEFRR
401: WLRERNLSSD DRIMRLKEGY IKEGSTVSVM GVVQKNDNVL MIVPPPEPIS TGCQWAKCVL PRDLYGLVLR CEDTSNIDVI AV
Best Arabidopsis Sequence Match ( AT1G78880.1 )
(BLAST)
001: MGSRYASHQL SNGLFVSGRP EQPKEKPPTM SSVAMPYTGG DIKKSGELGK MFDIPTDGTK SRKSGPITGG SSRSGAQSGP VPNATGRMSG NLASAGSNSM
101: KKTNSGPLSK HGEPLKKSSG PQSGGVTRQN SGPIPILPTT GLITSGPITS GPLNSSGAPR KISGPLDYSG SMKTHMPSVV HNQAVTTLAP EDDFSCMKSF
201: PKPVLWLVIL IFVMGFLAGG FILGAVHNAI LLIVVAVLFT VVAALFIWNI SCERRGITDF IARYPDADLR TAKNGQYVKV TGVVTCGNVP LESSFHRVPR
301: CVYTSTCLYE YRGWGSKPAN ASHRRFTWGL RSAERHVVDF YISDFQSGLR ALVKTGNGAK VTPLVDDSVV IDFKPGNEQA SPDFVRWLGK KNLTNDDRIM
401: RLKEGYIKEG STVSVIGVVQ RNDNVLMIVP TTEPLAAGWQ WSKCTFPASL EGIVLRCEDS SNVDAIPV
Arabidopsis Description
F9K20.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVA7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.