Factsheet for AT1G16860.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016629.1-P	Field mustard	plastid	89.66	90.43
CDX96804	Canola	plastid	89.66	90.43
CDX83939	Canola	cytosol, plastid, vacuole	89.03	89.98
AT1G78880.1	Thale cress	plastid	87.97	89.1
CDY40028	Canola	plastid	87.34	88.27
Bra026021.1-P	Field mustard	plastid	86.71	88.2
CDY35123	Canola	plastid	86.71	88.2
KRH44657	Soybean	plastid	73.63	73.01
KRH46999	Soybean	plastid	73.42	72.8
KRH09609	Soybean	plastid	71.73	71.88
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	71.73	71.13
KRH23708	Soybean	plastid	72.15	70.95
Os08t0230200-01	Rice	cytosol, plastid	70.89	69.57
Solyc03g123920.2.1	Tomato	plastid	64.98	69.53
EES12814	Sorghum	plastid	70.46	69.44
Zm00001d026258_P001	Maize	cytosol, plastid, vacuole	70.25	69.09
VIT_09s0018g01240.t01	Wine grape	plastid	68.99	67.7
KXG24772	Sorghum	cytosol, plasma membrane, plastid	67.72	67.15
Zm00001d050191_P003	Maize	plasma membrane	67.72	67.15
HORVU7Hr1G061070.1	Barley	cytosol, plasma membrane, plastid	67.3	66.18
Os04t0606500-01	Rice	plasma membrane	66.03	64.94
Zm00001d024364_P001	Maize	plasma membrane	67.51	64.65
TraesCS7D01G282000.3	Wheat	mitochondrion	66.88	63.53
TraesCS7A01G283600.2	Wheat	mitochondrion	66.88	63.53
Zm00001d002391_P005	Maize	cytosol, plasma membrane, plastid	70.04	63.48
TraesCS2A01G431500.2	Wheat	cytosol, plasma membrane, plastid	64.56	63.35
TraesCS2D01G429500.1	Wheat	cytosol, plasma membrane, plastid	64.56	63.35
TraesCS2B01G453000.2	Wheat	cytosol, plasma membrane, plastid	64.35	63.15
HORVU2Hr1G100660.2	Barley	cytosol, plasma membrane, plastid	64.14	62.94
TraesCS2D01G429600.1	Wheat	cytosol, nucleus, plastid	57.59	62.47
TraesCS2B01G453100.1	Wheat	cytosol, nucleus, plastid	57.38	62.24
TraesCS2A01G431600.1	Wheat	cytosol, nucleus, plastid	57.17	62.01
TraesCS7B01G176900.2	Wheat	plasma membrane	67.3	60.88
HORVU2Hr1G100700.2	Barley	plastid	55.91	60.64
AT4G22290.1	Thale cress	cytosol, plasma membrane, plastid	47.05	50.11
GSMUA_Achr3P28220_001	Banana	mitochondrion	9.28	9.61
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	8.02	9.18

Protein Annotations

MapMan:21.1.1.3.1	EntrezGene:838257	ProteinID:AAF99847.1	ProteinID:AEE29511.1	ArrayExpress:AT1G16860	EnsemblPlantsGene:AT1G16860
RefSeq:AT1G16860	TAIR:AT1G16860	RefSeq:AT1G16860-TAIR-G	EnsemblPlants:AT1G16860.1	TAIR:AT1G16860.1	EMBL:AY050887
EMBL:AY117261	Unigene:At.21790	EMBL:BT000665	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	RefSeq:NP_564009.1	PO:PO:0000293	PANTHER:PTHR33709	PANTHER:PTHR33709:SF9
UniProt:Q9FZ45	TMHMM:TMhelix	UniParc:UPI00000AC1A8	:	:	:

Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]

Coordinates

chr1:+:5767300..5770602

Molecular Weight (calculated)

50585.9 Da

IEP (calculated)

10.182

GRAVY (calculated)

-0.112

Length

474 amino acids

Sequence
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.