Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94089 | Canola | cytosol, plasma membrane, plastid | 84.94 | 85.52 |
| Bra019387.1-P | Field mustard | cytosol, plasma membrane, plastid | 84.04 | 84.62 |
| CDX98741 | Canola | cytosol, plasma membrane, plastid | 83.82 | 84.58 |
| Bra013607.1-P | Field mustard | cytosol, plasma membrane, plastid | 83.6 | 83.97 |
| CDX82929 | Canola | cytosol, plasma membrane, plastid | 83.15 | 83.9 |
| CDX79143 | Canola | cytosol, plasma membrane, plastid | 83.37 | 83.75 |
| KRH11512 | Soybean | plastid | 61.57 | 65.71 |
| Solyc04g014680.2.1 | Tomato | plastid | 62.92 | 64.52 |
| KRH36527 | Soybean | plastid | 60.67 | 64.29 |
| PGSC0003DMT400034711 | Potato | mitochondrion, plastid | 55.51 | 57.04 |
| Solyc11g012040.1.1 | Tomato | plastid | 55.28 | 56.81 |
| PGSC0003DMT400060565 | Potato | plastid | 62.25 | 53.79 |
| AT1G78880.1 | Thale cress | plastid | 50.11 | 47.65 |
| AT1G16860.1 | Thale cress | cytosol, mitochondrion, plastid, vacuole | 50.11 | 47.05 |
| GSMUA_Achr5P19960_001 | Banana | extracellular, plasma membrane, vacuole | 24.49 | 37.72 |
| Os04t0541900-00 | Rice | cytosol, golgi, peroxisome | 25.39 | 35.53 |
| VIT_15s0048g02880.t01 | Wine grape | plasma membrane | 26.07 | 35.47 |
| Zm00001d025966_P001 | Maize | golgi, peroxisome, plasma membrane | 25.17 | 35.0 |
| EES11199 | Sorghum | cytosol, endoplasmic reticulum, golgi | 25.84 | 34.74 |
| TraesCS2B01G407700.1 | Wheat | golgi, peroxisome, vacuole | 24.72 | 34.38 |
| TraesCS2A01G389500.1 | Wheat | golgi, plasma membrane, vacuole | 24.27 | 33.96 |
| TraesCS2D01G387400.1 | Wheat | golgi, plasma membrane, vacuole | 24.04 | 33.86 |
| HORVU2Hr1G092730.3 | Barley | endoplasmic reticulum | 21.8 | 32.99 |
| Zm00001d046644_P001 | Maize | nucleus, plasma membrane, plastid | 6.29 | 7.89 |
| TraesCS7B01G290800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 5.84 | 6.37 |
| KXG20435 | Sorghum | nucleus, plasma membrane, plastid | 5.84 | 6.37 |
| TraesCS7D01G384800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 5.84 | 6.34 |
| TraesCS7A01G388900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 5.84 | 6.34 |
| HORVU0Hr1G022000.9 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828324 | ProteinID:AEE84588.1 | ArrayExpress:AT4G22290 | EnsemblPlantsGene:AT4G22290 | RefSeq:AT4G22290 |
| TAIR:AT4G22290 | RefSeq:AT4G22290-TAIR-G | EnsemblPlants:AT4G22290.1 | TAIR:AT4G22290.1 | EMBL:AY140104 | Unigene:At.71029 |
| EMBL:BT006592 | GO:GO:0000245 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008270 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | GO:GO:0046872 | RefSeq:NP_193960.2 |
| PO:PO:0000293 | PANTHER:PTHR33709 | PANTHER:PTHR33709:SF2 | UniProt:Q8L6X7 | TMHMM:TMhelix | UniParc:UPI00000AA9C0 |
| SEG:seg | : | : | : | : | : |
Description
At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
Coordinates
chr4:-:11782840..11785937
Molecular Weight (calculated)
47539.4 Da
IEP (calculated)
10.254
GRAVY (calculated)
-0.057
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.