CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046644_P001	Maize	nucleus, plasma membrane, plastid	72.79	83.66
TraesCS7B01G290800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	67.16	67.16
TraesCS7D01G384800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	67.4	67.07
TraesCS7A01G388900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	66.91	66.59
CDX94532	Canola	cytosol, plasma membrane, plastid	6.62	6.32
CDY16692	Canola	cytosol, plasma membrane, plastid	6.62	6.31
CDX94089	Canola	cytosol, plasma membrane, plastid	6.62	6.11
Bra019387.1-P	Field mustard	cytosol, plasma membrane, plastid	6.62	6.11
AT4G22290.1	Thale cress	cytosol, plasma membrane, plastid	6.37	5.84
CDX82929	Canola	cytosol, plasma membrane, plastid	6.13	5.67
CDX98741	Canola	cytosol, plasma membrane, plastid	6.13	5.67
CDX79143	Canola	cytosol, plasma membrane, plastid	6.13	5.64
Bra013607.1-P	Field mustard	cytosol, plasma membrane, plastid	6.13	5.64
EES12814	Sorghum	plastid	6.62	5.61
KXG24772	Sorghum	cytosol, plasma membrane, plastid	6.37	5.44
KRH11512	Soybean	plastid	5.39	5.28
KRH36527	Soybean	plastid	5.39	5.24
Bra029474.1-P	Field mustard	cytosol, plasma membrane, plastid	4.41	4.52
EES11199	Sorghum	cytosol, endoplasmic reticulum, golgi	2.45	3.02

Protein Annotations

EnsemblPlants:KXG20435	EnsemblPlantsGene:SORBI_3010G200700	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33709
PANTHER:PTHR33709:SF2	ProteinID:KXG20435	ProteinID:KXG20435.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0007F249A9
UniProt:A0A194YKC4	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:54365052..54368590

Molecular Weight (calculated)

43349.6 Da

IEP (calculated)

9.849

GRAVY (calculated)

-0.185

Length

408 amino acids

Sequence
(BLAST)

001: MHQIGSGMYV SGPAPDRKRG RRLSAATPPY TGGDVARSGE LGRMFDIAAA SQSQVPSPAS SSRRSSGPLH RPSPSPASGP LSQLSHPPGL LVGPSPSPAP
101: SPSSSSRKGS SSSRSRRAGA GKEAAGTAVA LAPASGRLRL GVPFACYVLV AVAAAAALGA GAYCLVSWRR WEVLAAAGGA VAAVAAVFAS NAWRTAAEAE
201: RFFRRFPDTV FDDHGGDMPV GELVKITGQV TCGGQPLGAN FHDAARCVFT SVQLHERRRW GWCCCCRRRW QLRHSEARVT NFYISDRNSG KRFYVRAGEG
301: DVITPMIRYK TTSFDGSKKG ASQNLKNWMA TNELSYNGDL RVKEGLIREG DTASVIGILK KHHACDIVDA PAGVVTTGCQ LIRCMFPVFI EGLILIGDED
401: PDEAVYMV

Best Arabidopsis Sequence Match ( AT4G22290.1 )
(BLAST)

001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV

Arabidopsis Description

At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.