Factsheet for PGSC0003DMT400034711

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012040.1.1	Tomato	plastid	96.07	96.07
KRH11512	Soybean	plastid	61.2	63.55
KRH36527	Soybean	plastid	60.28	62.14
CDX82929	Canola	cytosol, plasma membrane, plastid	57.04	56.01
Bra013607.1-P	Field mustard	cytosol, plasma membrane, plastid	57.27	55.98
CDX79143	Canola	cytosol, plasma membrane, plastid	57.27	55.98
PGSC0003DMT400060565	Potato	plastid	66.28	55.73
CDX94089	Canola	cytosol, plasma membrane, plastid	56.81	55.66
AT4G22290.1	Thale cress	cytosol, plasma membrane, plastid	57.04	55.51
Bra019387.1-P	Field mustard	cytosol, plasma membrane, plastid	56.35	55.2
CDX98741	Canola	cytosol, plasma membrane, plastid	56.12	55.1
CDY16692	Canola	cytosol, plasma membrane, plastid	51.96	52.57
Bra029474.1-P	Field mustard	cytosol, plasma membrane, plastid	48.04	52.26
CDX94532	Canola	cytosol, plasma membrane, plastid	51.27	51.99
PGSC0003DMT400025018	Potato	cytosol, mitochondrion, plasma membrane, plastid	50.12	45.97
PGSC0003DMT400025021	Potato	cytosol, plasma membrane, plastid	49.65	45.55
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	49.88	45.19
PGSC0003DMT400000687	Potato	endoplasmic reticulum, plasma membrane, plastid	22.86	35.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400034711	EnsemblPlantsGene:PGSC0003DMG400013337	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33709
PANTHER:PTHR33709:SF2	PGSC:PGSC0003DMG400013337	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002966384	UniProt:M1B161
MapMan:35.1	:	:	:	:	:

Description

Ubiquitin thiolesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400013337]

Coordinates

chr11:+:743151..748698

Molecular Weight (calculated)

46818.7 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.074

Length

433 amino acids

Sequence
(BLAST)

001: MSSRIGSHQL RNGLFVSGRP EQQKERPTAI SRAVPYTGGD VKKSGELGKM YGIDMSTGDH HTGPPILKKP SSRASSSSQH NSGSVRSGPN SGQMGGHKSS
101: NSGPIPKKSS SGSGPIQPTG LIYSGPLSSS AGRRSGQLEP TISFKKIVYG SSVTSLSGDI KMGFNVSRVA MWVLFVVILM ALMAGAFVMA TVKKIVILVA
201: VGAAVAPILM ILLWNYAYKE RGLVEFLRRY PDAELRGAVN GQFVKVTGVV TCGSIPLETS FQRVPRCVYA STELHEYKAC VGNCANPRQR SFSWGRRHSE
301: NYVGDFYISD FQTGLRALVK AGYGAKVAPF VKSKTVVDVT SDSELSPNFI RWLADRNLSS DDRVMRLKEG YIKEGSTVSV MGVVMLQENV LMIVPPPEPI
401: SIGCQWLRCL LPTYVEGLIL TCDDIQDGDV IPV

Best Arabidopsis Sequence Match ( AT4G22290.1 )
(BLAST)

001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV

Arabidopsis Description

At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.