Factsheet for PGSC0003DMT400023759

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123920.2.1	Tomato	plastid	87.03	93.91
KRH44603	Soybean	cytosol	23.43	83.58
KRH44657	Soybean	plastid	81.17	81.17
KRH46999	Soybean	plastid	80.75	80.75
KRH09609	Soybean	plastid	79.5	80.34
KRH47297	Soybean	cytosol, plasma membrane, plastid	80.33	79.34
KRH23708	Soybean	plastid	79.5	78.84
VIT_09s0018g01240.t01	Wine grape	plastid	79.29	78.47
KRH44594	Soybean	cytosol, plasma membrane, plastid	56.69	77.21
PGSC0003DMT400025018	Potato	cytosol, mitochondrion, plasma membrane, plastid	74.48	75.42
PGSC0003DMT400025021	Potato	cytosol, plasma membrane, plastid	73.64	74.58
AT1G78880.1	Thale cress	plastid	72.38	73.93
Bra016629.1-P	Field mustard	plastid	72.59	73.83
CDX96804	Canola	plastid	72.59	73.83
CDX83939	Canola	cytosol, plastid, vacuole	72.38	73.77
CDY35123	Canola	plastid	70.29	72.1
Bra026021.1-P	Field mustard	plastid	70.29	72.1
CDY40028	Canola	plastid	70.5	71.86
CDX88486	Canola	mitochondrion, plastid, vacuole	70.29	71.79
CDX87427	Canola	mitochondrion, plastid, vacuole	70.29	71.79
AT1G16860.1	Thale cress	cytosol, mitochondrion, plastid, vacuole	71.13	71.73
CDX83594	Canola	plastid	70.5	71.55
CDY14586	Canola	plastid	70.29	71.34
CDY26883	Canola	mitochondrion, plastid, vacuole	69.25	70.28
Bra008384.1-P	Field mustard	plastid	60.04	68.5
Bra035072.1-P	Field mustard	plasma membrane	69.04	59.35
PGSC0003DMT400034711	Potato	mitochondrion, plastid	45.19	49.88
PGSC0003DMT400060565	Potato	plastid	47.28	43.88
PGSC0003DMT400000687	Potato	endoplasmic reticulum, plasma membrane, plastid	22.8	38.93
GSMUA_Achr3P28220_001	Banana	mitochondrion	9.21	9.61
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	7.95	9.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400023759	EnsemblPlantsGene:PGSC0003DMG402009190	EntrezGene:102604815	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33709	PANTHER:PTHR33709:SF4	PGSC:PGSC0003DMG402009190	RefSeq:XP_006342861.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029480CF	UniProt:M1AIY2	MapMan:21.1.1.3.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402009190]

Coordinates

chr3:-:61959548..61968507

Molecular Weight (calculated)

51239.5 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.108

Length

478 amino acids

Sequence
(BLAST)

001: MGSRFPSHQL SNGLYVSGRP EQPKERTPTI TSAPMPYTGG DIKKSGELGK MFDIPVDGSK SRKSGPITSA PSRTGLYTSL SGPINSNAAA RTTYSTSGPI
101: SSSGMPASVS TKKSNSGPLS KHGEPIKKSS GPQSGGVTPT GRQNSGPQPL LLPATGLITS GPLNSSGAPR KVSGPLDSIG SAKIHGPSLV NSQAVTTLSQ
201: NDVYSFKRSF PKPILWAMIL LFVMGFIAGG FILAAVHNAI LVIVVVVLFG IVAALFVWNS CWGGSAIVGF ITRYPDSELR TAKNGDYVKV SGVVTCGNVP
301: LESSFQKVPR CVYTSTSLYE YRGWDSKAAN PTHRRFTWGL RSSERHVVDF YISDFQSGLR ALVKTGYGAK VTPYVDESVV IDVDPLNSEL SPEFIRWLRE
401: RSLSSDDRIM RLKEGYIKEG STVSVIGVVQ RNENVLMIVP PPEPFTTGCQ WLKCIFPASL EGIVLRCEDA SKVDAIPV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.