CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016629.1-P	Field mustard	plastid	99.36	99.36
CDX83939	Canola	cytosol, plastid, vacuole	97.23	97.44
CDY40028	Canola	plastid	90.0	90.19
CDY35123	Canola	plastid	89.15	89.91
AT1G16860.1	Thale cress	cytosol, mitochondrion, plastid, vacuole	90.43	89.66
CDX87427	Canola	mitochondrion, plastid, vacuole	83.19	83.55
CDX88486	Canola	mitochondrion, plastid, vacuole	82.77	83.12
CDY14586	Canola	plastid	83.19	83.01
CDX83594	Canola	plastid	82.98	82.8
CDY26883	Canola	mitochondrion, plastid, vacuole	81.49	81.32
KRH46999	Soybean	plastid	74.68	73.43
KRH44657	Soybean	plastid	74.47	73.22
KRH09609	Soybean	plastid	73.19	72.73
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	73.83	72.59
KRH23708	Soybean	plastid	73.83	71.99
EES12814	Sorghum	plastid	71.91	70.27
Solyc03g123920.2.1	Tomato	plastid	66.17	70.2
Os08t0230200-01	Rice	cytosol, plastid	71.91	69.98
Zm00001d026258_P001	Maize	cytosol, plastid, vacuole	71.7	69.92
VIT_09s0018g01240.t01	Wine grape	plastid	70.21	68.32
Zm00001d050191_P003	Maize	plasma membrane	68.09	66.95
KXG24772	Sorghum	cytosol, plasma membrane, plastid	68.09	66.95
Os04t0606500-01	Rice	plasma membrane	67.66	65.98
HORVU7Hr1G061070.1	Barley	cytosol, plasma membrane, plastid	66.81	65.15
Zm00001d024364_P001	Maize	plasma membrane	67.87	64.44
Zm00001d002391_P005	Maize	cytosol, plasma membrane, plastid	71.49	64.24
TraesCS2D01G429500.1	Wheat	cytosol, plasma membrane, plastid	65.74	63.98
TraesCS2A01G431500.2	Wheat	cytosol, plasma membrane, plastid	65.74	63.98
HORVU2Hr1G100660.2	Barley	cytosol, plasma membrane, plastid	65.32	63.56
TraesCS2B01G453000.2	Wheat	cytosol, plasma membrane, plastid	65.32	63.56
TraesCS2D01G429600.1	Wheat	cytosol, nucleus, plastid	58.72	63.16
TraesCS7D01G282000.3	Wheat	mitochondrion	66.38	62.53
TraesCS7A01G283600.2	Wheat	mitochondrion	66.38	62.53
TraesCS2A01G431600.1	Wheat	cytosol, nucleus, plastid	58.09	62.47
TraesCS2B01G453100.1	Wheat	cytosol, nucleus, plastid	58.09	62.47
HORVU2Hr1G100700.2	Barley	plastid	56.81	61.1
TraesCS7B01G176900.2	Wheat	plasma membrane	66.81	59.92
CDY33180	Canola	cytosol	15.96	50.68
CDX98741	Canola	cytosol, plasma membrane, plastid	47.23	50.34
CDX82929	Canola	cytosol, plasma membrane, plastid	47.23	50.34
CDY16692	Canola	cytosol, plasma membrane, plastid	45.74	50.23
CDX94089	Canola	cytosol, plasma membrane, plastid	47.02	50.0
CDX79143	Canola	cytosol, plasma membrane, plastid	47.02	49.89
CDX94532	Canola	cytosol, plasma membrane, plastid	45.32	49.88
GSMUA_Achr3P28220_001	Banana	mitochondrion	9.15	9.39
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	7.87	8.94

Protein Annotations

EnsemblPlants:CDX96804	EnsemblPlantsGene:GSBRNA2T00103037001	GO:A0A078E7X2	PANTHER:PTHR33709	PANTHER:PTHR33709:SF9	ProteinID:CDX96804
ProteinID:CDX96804.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEA781	MapMan:21.1.1.3.1	:

Description

BnaA08g23470D

Coordinates

chrLK031895:-:1027658..1030344

Molecular Weight (calculated)

50136.1 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.174

Length

470 amino acids

Sequence
(BLAST)

001: MGSRYPSHQL GNGLFVSGRP EQPKERPPTM SSTAMPYTGG DIKKSGELGK MFIPTDGSKS RKSGPIPGAP SRSGSFAGTA QSGPGAANAT GRMSGSLASS
101: GGGSVSMKKT NSGPLSKHGE PLKKSSGPQS GGVTRQHSGP IPVLPATGLI TSGPLNSSGA PRKVSGPLDS SGSLKTHMAS VVHNQAVTTL GPEDEFSSLK
201: SFPKSVLWLV VLIFIMGFLA GGFILGAVHN PMLLIVVAVF FTVVAALFIW NSCWGRRGIT DFIARYPDAD LRTAKNGQFV KVTGVVTCGN VPLESSFQRV
301: PRCVYTSTCL YEYRGWGSKP ANSSHRCFTW GLRSSERHVV DFYISDFQSG LRALVKTGNG AKVTPLVDDS AVIDYKHGSE KMSPDFVRWL RQKNLSSDDR
401: IMRLKEGYIK EGSTVSVIGV VQRNDNVLMI VPSSEPITAG WQWSRCTFPT SLEGIVLRCE DSSNVDAIPV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.