Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87427 | Canola | mitochondrion, plastid, vacuole | 56.08 | 17.73 |
| CDX88486 | Canola | mitochondrion, plastid, vacuole | 56.08 | 17.73 |
| CDX83594 | Canola | plastid | 56.08 | 17.62 |
| CDY14586 | Canola | plastid | 56.08 | 17.62 |
| CDY26883 | Canola | mitochondrion, plastid, vacuole | 56.08 | 17.62 |
| CDX96804 | Canola | plastid | 50.68 | 15.96 |
| CDX83939 | Canola | cytosol, plastid, vacuole | 50.0 | 15.78 |
| CDY35123 | Canola | plastid | 49.32 | 15.67 |
| CDY40028 | Canola | plastid | 49.32 | 15.56 |
| CDX94532 | Canola | cytosol, plasma membrane, plastid | 33.11 | 11.48 |
| CDY16692 | Canola | cytosol, plasma membrane, plastid | 33.11 | 11.45 |
| CDX82929 | Canola | cytosol, plasma membrane, plastid | 33.78 | 11.34 |
| CDX79143 | Canola | cytosol, plasma membrane, plastid | 33.78 | 11.29 |
| CDX98741 | Canola | cytosol, plasma membrane, plastid | 32.43 | 10.88 |
| CDX94089 | Canola | cytosol, plasma membrane, plastid | 32.43 | 10.86 |
Protein Annotations
| EnsemblPlants:CDY33180 | EnsemblPlantsGene:GSBRNA2T00053904001 | PANTHER:PTHR33709 | PANTHER:PTHR33709:SF9 | ProteinID:CDY33180 | ProteinID:CDY33180.1 |
| UniParc:UPI0004EE0896 | UniProt:A0A078H3G9 | MapMan:35.1 | : | : | : |
Description
BnaC04g08590DBnaC04g08590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3G9]
Coordinates
chrLK032308:+:168237..170337
Molecular Weight (calculated)
16581.8 Da
IEP (calculated)
6.496
GRAVY (calculated)
-0.063
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MFANNFIAHS FVDQNTASKE HKLLLRCKRL YLWCWKIYLP GLYDQVKETT SEISKIITAQ GKDSESQPSG FSFVNCNISG TEKIWYIKEG STVSVIGVVQ
101: RNESVLMIVP TTEPLAAGWQ WSKCTFPASL EGIVLRCEDS SNVDAIPV
101: RNESVLMIVP TTEPLAAGWQ WSKCTFPASL EGIVLRCEDS SNVDAIPV
001: MGSRYASHQL SNGLFVSGRP EQPKEKPPTM SSVAMPYTGG DIKKSGELGK MFDIPTDGTK SRKSGPITGG SSRSGAQSGP VPNATGRMSG NLASAGSNSM
101: KKTNSGPLSK HGEPLKKSSG PQSGGVTRQN SGPIPILPTT GLITSGPITS GPLNSSGAPR KISGPLDYSG SMKTHMPSVV HNQAVTTLAP EDDFSCMKSF
201: PKPVLWLVIL IFVMGFLAGG FILGAVHNAI LLIVVAVLFT VVAALFIWNI SCERRGITDF IARYPDADLR TAKNGQYVKV TGVVTCGNVP LESSFHRVPR
301: CVYTSTCLYE YRGWGSKPAN ASHRRFTWGL RSAERHVVDF YISDFQSGLR ALVKTGNGAK VTPLVDDSVV IDFKPGNEQA SPDFVRWLGK KNLTNDDRIM
401: RLKEGYIKEG STVSVIGVVQ RNDNVLMIVP TTEPLAAGWQ WSKCTFPASL EGIVLRCEDS SNVDAIPV
101: KKTNSGPLSK HGEPLKKSSG PQSGGVTRQN SGPIPILPTT GLITSGPITS GPLNSSGAPR KISGPLDYSG SMKTHMPSVV HNQAVTTLAP EDDFSCMKSF
201: PKPVLWLVIL IFVMGFLAGG FILGAVHNAI LLIVVAVLFT VVAALFIWNI SCERRGITDF IARYPDADLR TAKNGQYVKV TGVVTCGNVP LESSFHRVPR
301: CVYTSTCLYE YRGWGSKPAN ASHRRFTWGL RSAERHVVDF YISDFQSGLR ALVKTGNGAK VTPLVDDSVV IDFKPGNEQA SPDFVRWLGK KNLTNDDRIM
401: RLKEGYIKEG STVSVIGVVQ RNDNVLMIVP TTEPLAAGWQ WSKCTFPASL EGIVLRCEDS SNVDAIPV
Arabidopsis Description
F9K20.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVA7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.