Factsheet for VIT_11s0052g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01240.t01	Wine grape	plastid	83.78	83.44
PGSC0003DMT400025018	Potato	cytosol, mitochondrion, plasma membrane, plastid	80.67	82.2
PGSC0003DMT400025021	Potato	cytosol, plasma membrane, plastid	80.04	81.57
Solyc12g017450.1.1	Tomato	cytosol, plasma membrane, plastid	79.83	81.36
GSMUA_Achr9P22990_001	Banana	plastid	81.29	80.45
GSMUA_Achr1P10460_001	Banana	plastid	70.48	80.14
GSMUA_Achr5P04950_001	Banana	cytosol, plasma membrane, plastid	74.84	78.77
Zm00001d026258_P001	Maize	cytosol, plastid, vacuole	77.96	77.8
EES12814	Sorghum	plastid	77.75	77.75
GSMUA_AchrUn_...	Banana	plastid	73.18	77.19
GSMUA_Achr7P04950_001	Banana	cytosol, plasma membrane, plastid	69.23	77.08
Os08t0230200-01	Rice	cytosol, plastid	77.13	76.81
GSMUA_Achr1P23590_001	Banana	plastid	73.39	76.41
GSMUA_Achr3P27840_001	Banana	plastid	76.51	75.72
KXG24772	Sorghum	cytosol, plasma membrane, plastid	73.8	74.27
GSMUA_Achr9P13890_001	Banana	plastid	59.88	74.23
Zm00001d050191_P003	Maize	plasma membrane	72.97	73.43
HORVU7Hr1G061070.1	Barley	cytosol, plasma membrane, plastid	73.18	73.03
Os04t0606500-01	Rice	plasma membrane	72.77	72.61
Zm00001d002391_P005	Maize	cytosol, plasma membrane, plastid	77.55	71.32
Zm00001d024364_P001	Maize	plasma membrane	73.39	71.31
TraesCS7A01G283600.2	Wheat	mitochondrion	72.77	70.14
TraesCS7D01G282000.3	Wheat	mitochondrion	72.77	70.14
TraesCS2D01G429500.1	Wheat	cytosol, plasma membrane, plastid	69.23	68.94
TraesCS2D01G429600.1	Wheat	cytosol, nucleus, plastid	62.58	68.88
HORVU2Hr1G100660.2	Barley	cytosol, plasma membrane, plastid	69.02	68.74
TraesCS2B01G453000.2	Wheat	cytosol, plasma membrane, plastid	69.02	68.74
TraesCS2A01G431500.2	Wheat	cytosol, plasma membrane, plastid	69.02	68.74
TraesCS2B01G453100.1	Wheat	cytosol, nucleus, plastid	62.16	68.42
TraesCS2A01G431600.1	Wheat	cytosol, nucleus, plastid	61.95	68.19
TraesCS7B01G176900.2	Wheat	plasma membrane	73.18	67.18
HORVU2Hr1G100700.2	Barley	plastid	60.5	66.59
VIT_15s0048g02880.t01	Wine grape	plasma membrane	26.82	39.45
VIT_14s0060g00070.t01	Wine grape	nucleus	4.57	24.72
VIT_13s0019g03150.t01	Wine grape	plastid	8.52	15.3

Protein Annotations

EntrezGene:100256545	wikigene:100256545	MapMan:21.1.1.3.1	UniProt:A5AF64	EMBL:AM425137	ProteinID:CAN82086
ProteinID:CAN82086.1	ProteinID:CCB44689	ProteinID:CCB44689.1	EMBL:FN594964	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100256545	wikigene:LOC100256545	PANTHER:PTHR33709	PANTHER:PTHR33709:SF4	TIGR:TC58324
TMHMM:TMhelix	UniParc:UPI0001523987	ArrayExpress:VIT_11s0052g00020	EnsemblPlantsGene:VIT_11s0052g00020	EnsemblPlants:VIT_11s0052g00020.t01	unigene:Vvi.2171
RefSeq:XP_002264547	RefSeq:XP_002264547.1	RefSeq:XP_010656903.1	RefSeq:XP_010656905.1	RefSeq:XP_019078523.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:16918851..16924178

Molecular Weight (calculated)

51789.9 Da

IEP (calculated)

10.102

GRAVY (calculated)

-0.209

Length

481 amino acids

Sequence
(BLAST)

001: MGSRFPSHQL SNGLYVSGRP EQPKERPPTM SSTAMPYTGG DIKRSGELGK MFDIPVDGSR SRKSGPINNA PSRTGSFGGA ASHSGPIMSN SINRPGSVSS
101: AGIPGSASVK KTNSGPLNRH GDPVKKSSGP QPGGGNSVSR QNSGPLAPVL PTTGLITSGP ISSGPLNSSG APRKVSGPLD STGSLKLHAA SIAHNQAVTN
201: LSQEDEYSFH RSFPKPILWS MVLLFVMGFI AGGFILGAVH NPILLIVVVV LFGAVAAVFI WNTYWGRRAI TGFIARYPDA ELRTARDGQF VKVSGVVTCG
301: NVPLESSFQR VPRCVYTSTS LYEYRGWDSK AANPTHRRFT WGLRSLERHV VDFYISDFQS GLRALVKTGY GARVTPYVDE SVVVDINQSN RDMSPEFIRW
401: LGERNLSSDD RVMRLKEGYI KEGSTVSVMG VVQRNENVLM IVPPPEPFPT GCQWAKCILP ASLEGIVLRC EDTSKIDVIP V

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.