Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 3
- plasma membrane 4
- extracellular 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000687 | Potato | endoplasmic reticulum, plasma membrane, plastid | 93.93 | 93.93 |
| VIT_15s0048g02880.t01 | Wine grape | plasma membrane | 58.57 | 50.15 |
| GSMUA_Achr5P19960_001 | Banana | extracellular, plasma membrane, vacuole | 48.93 | 47.4 |
| TraesCS2D01G387400.1 | Wheat | golgi, plasma membrane, vacuole | 44.29 | 39.24 |
| TraesCS2A01G389500.1 | Wheat | golgi, plasma membrane, vacuole | 44.29 | 38.99 |
| TraesCS2B01G407700.1 | Wheat | golgi, peroxisome, vacuole | 43.93 | 38.44 |
| Os04t0541900-00 | Rice | cytosol, golgi, peroxisome | 43.57 | 38.36 |
| Zm00001d025966_P001 | Maize | golgi, peroxisome, plasma membrane | 41.79 | 36.56 |
| EES11199 | Sorghum | cytosol, endoplasmic reticulum, golgi | 42.86 | 36.25 |
| Solyc03g123920.2.1 | Tomato | plastid | 38.57 | 24.38 |
| Solyc04g014680.2.1 | Tomato | plastid | 37.5 | 24.19 |
| Solyc12g017450.1.1 | Tomato | cytosol, plasma membrane, plastid | 38.57 | 22.88 |
| Solyc11g012040.1.1 | Tomato | plastid | 35.36 | 22.86 |
| HORVU0Hr1G022000.9 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc01g096300.2.1 | EnsemblPlantsGene:Solyc01g096300.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33709 |
| PANTHER:PTHR33709:SF1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276789E | UniProt:K4B018 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1:-:87382539..87386817
Molecular Weight (calculated)
31327.4 Da
IEP (calculated)
9.432
GRAVY (calculated)
0.335
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQNNFSHSN VPQSFKFPLI SSLALCFVFA LFLFGLAVSL FILVVVHNPL FFLSYLFLFG LIAAFLLWNS ISFRNNTTIL HYLRSLPDAD LTVARHGHLV
101: KITGLVSCGN VSLESSYEKV GRCVYTSTLL FECGKLGLKP ADVKESCFRW RLAYSERLST DFYITDKNSG IRAFVKAGPD SRVIPLIKES RLVTTAKNCK
201: VLASHLRKWL RDRNLSSEAR LLRLEEGYVK EGSSISVFGI LQSSNDVMVV TPPQELISTG CLWKKLLLPV DVDGLILAIP
101: KITGLVSCGN VSLESSYEKV GRCVYTSTLL FECGKLGLKP ADVKESCFRW RLAYSERLST DFYITDKNSG IRAFVKAGPD SRVIPLIKES RLVTTAKNCK
201: VLASHLRKWL RDRNLSSEAR LLRLEEGYVK EGSSISVFGI LQSSNDVMVV TPPQELISTG CLWKKLLLPV DVDGLILAIP
001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
Arabidopsis Description
Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.