Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14891 | Soybean | cytosol | 51.43 | 57.6 |
| KRH73235 | Soybean | cytosol | 51.43 | 57.6 |
| PGSC0003DMT400061524 | Potato | nucleus | 45.0 | 52.5 |
| Solyc06g050700.2.1 | Tomato | nucleus | 27.14 | 51.35 |
| GSMUA_Achr9P17880_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 45.0 | 45.65 |
| VIT_13s0019g01660.t01 | Wine grape | mitochondrion | 35.71 | 29.07 |
| VIT_08s0007g05880.t01 | Wine grape | cytosol | 36.43 | 24.52 |
Protein Annotations
| ArrayExpress:VIT_13s0067g02130 | EMBL:FN595514 | EnsemblPlants:VIT_13s0067g02130.t01 | EnsemblPlantsGene:VIT_13s0067g02130 | EntrezGene:100248433 | EntrezGene:LOC100248433 |
| InterPro:Ataxin-2_C | PANTHER:PTHR33790 | PANTHER:PTHR33790:SF6 | PFAM:PF07145 | ProteinID:CCB49821 | ProteinID:CCB49821.1 |
| RefSeq:XP_003633435 | RefSeq:XP_003633435.1 | SEG:seg | TIGR:TC57236 | TIGR:TC62839 | UniParc:UPI000210A9F5 |
| UniProt:F6HC97 | wikigene:100248433 | wikigene:LOC100248433 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr13:+:1204336..1205097
Molecular Weight (calculated)
16209.0 Da
IEP (calculated)
4.558
GRAVY (calculated)
-0.637
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEVISRTP PSSSTLNPNA PLFVPLAYRT VEDFSDQWWA LVQSSPWFRD YWLQECFQDP ETDPYCYDID DPALPDIDAL FDDCTGSKAE EEKEHQRELV
101: SLGALKWRKT RDPVVTPRHF EKAPKIVSVK VSPRPIQQPR
101: SLGALKWRKT RDPVVTPRHF EKAPKIVSVK VSPRPIQQPR
001: MTATIDRRLS TLNPNAPVFD PVEFREVEDF SPKWWDLVTT SKWFRDFWLS ANSENEFLGG DDFSVMEEEF EEMIASSDGG SMADTVTEAD VASYLKMLLN
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
Arabidopsis Description
CID2Polyadenylate-binding protein-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94AR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.