Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- peroxisome 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061524 | Potato | nucleus | 81.08 | 50.0 |
| KRH14891 | Soybean | cytosol | 55.41 | 32.8 |
| KRH73235 | Soybean | cytosol | 55.41 | 32.8 |
| VIT_13s0067g02130.t01 | Wine grape | cytosol | 51.35 | 27.14 |
| GSMUA_Achr9P17880_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 48.65 | 26.09 |
| Solyc10g079820.1.1 | Tomato | mitochondrion | 41.89 | 19.87 |
| Solyc04g017690.2.1 | Tomato | mitochondrion, nucleus, plastid | 43.24 | 19.75 |
Protein Annotations
| EnsemblPlants:Solyc06g050700.2.1 | EnsemblPlantsGene:Solyc06g050700.2 | InterPro:Ataxin-2_C | PANTHER:PTHR33790 | PFAM:PF07145 | UniParc:UPI0002766B2E |
| UniProt:K4C5L4 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:33472507..33473466
Molecular Weight (calculated)
8919.2 Da
IEP (calculated)
4.338
GRAVY (calculated)
-0.678
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MATSTLNPNA PMFVPFEYRQ VEDFSDHWWD LVHSSPWFRH YWLRECFSDP DADNDFSHTY GCSLLPDTDF IKRE
001: MTATIDRRLS TLNPNAPVFD PVEFREVEDF SPKWWDLVTT SKWFRDFWLS ANSENEFLGG DDFSVMEEEF EEMIASSDGG SMADTVTEAD VASYLKMLLN
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
Arabidopsis Description
CID2Polyadenylate-binding protein-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94AR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.