Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050700.2.1 | Tomato | nucleus | 50.0 | 81.08 |
| KRH14891 | Soybean | cytosol | 55.0 | 52.8 |
| KRH73235 | Soybean | cytosol | 54.17 | 52.0 |
| VIT_13s0067g02130.t01 | Wine grape | cytosol | 52.5 | 45.0 |
| GSMUA_Achr9P17880_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 50.0 | 43.48 |
| PGSC0003DMT400076750 | Potato | mitochondrion | 40.83 | 31.41 |
| PGSC0003DMT400019731 | Potato | cytosol, mitochondrion, plastid | 41.67 | 29.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061524 | EnsemblPlantsGene:PGSC0003DMG400023945 | EntrezGene:102604760 | InterPro:Ataxin-2_C | PANTHER:PTHR33790 | PFAM:PF07145 |
| PGSC:PGSC0003DMG400023945 | RefSeq:XP_006353409.1 | UniParc:UPI0002956BDA | UniProt:M1C7M5 | MapMan:35.2 | : |
Description
Poly(A)-binding protein C-terminal interacting protein 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400023945]
Coordinates
chr6:+:30614351..30615554
Molecular Weight (calculated)
14265.7 Da
IEP (calculated)
5.995
GRAVY (calculated)
-0.801
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSTLNPNA PMFVPSEYRQ VEDFSDHWWD LVHSSPWFRH YWLRECFSDP EADHDFSDTY DSLLPDTDFI KQEENKKELI TLGMLEWNKS RVTAEIPKYG
101: KKVPKIVNVK VSPRHIQQPR
101: KKVPKIVNVK VSPRHIQQPR
001: MTATIDRRLS TLNPNAPVFD PVEFREVEDF SPKWWDLVTT SKWFRDFWLS ANSENEFLGG DDFSVMEEEF EEMIASSDGG SMADTVTEAD VASYLKMLLN
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
Arabidopsis Description
CID2Polyadenylate-binding protein-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94AR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.