Factsheet for PGSC0003DMT400019731

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g017690.2.1	Tomato	mitochondrion, nucleus, plastid	77.25	79.63
PGSC0003DMT400076750	Potato	mitochondrion	62.87	67.31
KRH66836	Soybean	cytosol	32.93	52.38
KRG95151	Soybean	cytosol	31.14	50.0
CDY35413	Canola	cytosol, mitochondrion	42.52	48.63
CDY22525	Canola	cytosol, mitochondrion	41.92	47.95
CDY14771	Canola	mitochondrion	44.31	47.13
Bra000227.1-P	Field mustard	nucleus	34.73	46.77
Bra016934.1-P	Field mustard	mitochondrion	43.71	46.5
CDY06923	Canola	mitochondrion	43.71	46.5
AT2G41430.4	Thale cress	mitochondrion	42.52	43.56
PGSC0003DMT400061524	Potato	nucleus	29.94	41.67
VIT_08s0007g05880.t01	Wine grape	cytosol	49.1	39.42
Zm00001d022416_P001	Maize	cytosol	26.35	38.94
GSMUA_Achr8P29540_001	Banana	cytosol	36.53	37.42
GSMUA_Achr1P11430_001	Banana	cytosol, extracellular	35.93	36.81
TraesCS1A01G116700.1	Wheat	cytosol	28.14	36.15
KXG39364	Sorghum	nucleus	31.74	35.81
TraesCS1B01G136700.2	Wheat	cytosol	29.34	35.51
TraesCS1D01G117900.1	Wheat	cytosol	29.34	35.51
TraesCS4B01G239000.1	Wheat	cytosol	25.75	34.13
TraesCS2A01G127100.1	Wheat	cytosol	30.54	32.69
TraesCS2D01G129500.1	Wheat	cytosol	30.54	32.69
Os03t0353400-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.34	30.62
Os07t0661400-01	Rice	plastid	28.14	30.52
EER99855	Sorghum	cytosol	29.94	30.3
Zm00001d007097_P001	Maize	cytosol, plastid	28.74	30.19
TraesCS2B01G148900.1	Wheat	cytosol	31.74	28.34
Zm00001d047470_P005	Maize	plastid	28.14	27.17
Zm00001d048165_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	24.55	25.15

Protein Annotations

EnsemblPlants:PGSC0003DMT400019731	EnsemblPlantsGene:PGSC0003DMG400007624	EntrezGene:102602203	InterPro:Ataxin-2_C	PANTHER:PTHR33790	PANTHER:PTHR33790:SF1
PFAM:PF07145	PGSC:PGSC0003DMG400007624	SEG:seg	UniParc:UPI0002967791	UniProt:M1ACH7	MapMan:35.1

Description

ERD15 [Source:PGSC_GENE;Acc:PGSC0003DMG400007624]

Coordinates

chr4:-:11354785..11356912

Molecular Weight (calculated)

18733.9 Da

IEP (calculated)

4.205

GRAVY (calculated)

-0.553

Length

167 amino acids

Sequence
(BLAST)

001: MALVSGGRSS TLNPNAPLFI PSYVQQVEDF SPEWWNLVTT ATWFRDYWTS QHQGEEYGDD DLGFAGNDVA DLLPENIDLD VDEDILNMEA QFEEFLQSSE
101: SEQQGIKSSL SGVNGLFQFG LPKGSEALVR TLSMPKPKSP IEPPKLYEKP AKIVSPKNSL RRIQQPR

Best Arabidopsis Sequence Match ( AT2G41430.5 )
(BLAST)

001: MAMVSGRRST LNPDAPLFIP AAVRQVEDFS PEWWQLVTTS TWYPDYWISQ QQQGADGFYD NGENENGGGH IDVADLLPES FDFDDMEDFF DTDAAEFDQG
101: FDGRMYYQAP SEFGFGKNGE MVKKSSGNRS PRSIVEPAKY AEKPAKWGNQ RVAAAPRNIH QPR

Arabidopsis Description

ERD15LSR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.