CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016934.1-P	Field mustard	mitochondrion	99.36	99.36
CDY06923	Canola	mitochondrion	99.36	99.36
CDY35413	Canola	cytosol, mitochondrion	78.34	84.25
CDY22525	Canola	cytosol, mitochondrion	71.34	76.71
AT2G41430.4	Thale cress	mitochondrion	75.16	72.39
KRG95151	Soybean	cytosol	38.85	58.65
KRH66836	Soybean	cytosol	37.58	56.19
Solyc10g079820.1.1	Tomato	mitochondrion	46.5	46.79
Solyc04g017690.2.1	Tomato	mitochondrion, nucleus, plastid	47.77	46.3
PGSC0003DMT400076750	Potato	mitochondrion	45.86	46.15
PGSC0003DMT400019731	Potato	cytosol, mitochondrion, plastid	47.13	44.31
TraesCS1B01G136700.2	Wheat	cytosol	35.03	39.86
Zm00001d022416_P001	Maize	cytosol	28.66	39.82
TraesCS1A01G116700.1	Wheat	cytosol	32.48	39.23
TraesCS1D01G117900.1	Wheat	cytosol	34.39	39.13
GSMUA_Achr1P11430_001	Banana	cytosol, extracellular	37.58	36.2
VIT_08s0007g05880.t01	Wine grape	cytosol	47.77	36.06
TraesCS4B01G239000.1	Wheat	cytosol	28.66	35.71
TraesCS2D01G129500.1	Wheat	cytosol	35.03	35.26
Os07t0661400-01	Rice	plastid	34.39	35.06
EER99855	Sorghum	cytosol	36.31	34.55
Os03t0353400-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.03	34.38
GSMUA_Achr8P29540_001	Banana	cytosol	35.67	34.36
TraesCS2A01G127100.1	Wheat	cytosol	33.76	33.97
Zm00001d007097_P001	Maize	cytosol, plastid	33.76	33.33
CDY01210	Canola	cytosol	28.66	32.61
KXG39364	Sorghum	nucleus	30.57	32.43
CDY12749	Canola	cytosol	28.03	31.21
CDY01209	Canola	cytosol	28.03	31.21
TraesCS2B01G148900.1	Wheat	cytosol	33.12	27.81
Zm00001d047470_P005	Maize	plastid	28.03	25.43
Zm00001d048165_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	25.48	24.54

Protein Annotations

EnsemblPlants:CDY14771	EnsemblPlantsGene:GSBRNA2T00084633001	InterPro:Ataxin-2_C	PANTHER:PTHR33790	PANTHER:PTHR33790:SF1	PFAM:PF07145
ProteinID:CDY14771	ProteinID:CDY14771.1	SEG:seg	unigene:Bna.666	UniParc:UPI0004EB7F3B	UniProt:A0A078FNP7
MapMan:35.1	:	:	:	:	:

Description

BnaC04g47680DBnaC04g47680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNP7]

Coordinates

chrLK032047:+:283693..285143

Molecular Weight (calculated)

17758.4 Da

IEP (calculated)

4.680

GRAVY (calculated)

-0.770

Length

157 amino acids

Sequence
(BLAST)

001: MAMVSGRRST LNPNAPLFVP AAVRQVEDFS PEWWQLVTTS TWYHDYWISQ HQGADGFYDN GESGEVDVAD LLPESFDFDD IEDVFESEFD HQGYGGYVGQ
101: QMYHAPSDFG LGKNGEMVRK SSGNRSPRSI VEPAKYAEKP AKWGNQKVAP RNIHQPR

Best Arabidopsis Sequence Match ( AT2G41430.5 )
(BLAST)

001: MAMVSGRRST LNPDAPLFIP AAVRQVEDFS PEWWQLVTTS TWYPDYWISQ QQQGADGFYD NGENENGGGH IDVADLLPES FDFDDMEDFF DTDAAEFDQG
101: FDGRMYYQAP SEFGFGKNGE MVKKSSGNRS PRSIVEPAKY AEKPAKWGNQ RVAAAPRNIH QPR

Arabidopsis Description

ERD15LSR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.