Factsheet for PGSC0003DMT400076750

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plasma membrane 1
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079820.1.1	Tomato	mitochondrion	98.72	98.72
PGSC0003DMT400019731	Potato	cytosol, mitochondrion, plastid	67.31	62.87
KRH66836	Soybean	cytosol	35.26	52.38
KRG95151	Soybean	cytosol	33.33	50.0
CDY35413	Canola	cytosol, mitochondrion	45.51	48.63
CDY22525	Canola	cytosol, mitochondrion	44.87	47.95
Bra000227.1-P	Field mustard	nucleus	36.54	45.97
CDY14771	Canola	mitochondrion	46.15	45.86
CDY06923	Canola	mitochondrion	46.15	45.86
Bra016934.1-P	Field mustard	mitochondrion	46.15	45.86
AT2G41430.4	Thale cress	mitochondrion	44.87	42.94
PGSC0003DMT400061524	Potato	nucleus	31.41	40.83
VIT_08s0007g05880.t01	Wine grape	cytosol	52.56	39.42
GSMUA_Achr8P29540_001	Banana	cytosol	39.1	37.42
Zm00001d022416_P001	Maize	cytosol	26.92	37.17
GSMUA_Achr1P11430_001	Banana	cytosol, extracellular	37.82	36.2
TraesCS1B01G136700.2	Wheat	cytosol	31.41	35.51
TraesCS1D01G117900.1	Wheat	cytosol	30.77	34.78
TraesCS1A01G116700.1	Wheat	cytosol	28.21	33.85
KXG39364	Sorghum	nucleus	31.41	33.11
TraesCS4B01G239000.1	Wheat	cytosol	26.28	32.54
TraesCS2D01G129500.1	Wheat	cytosol	31.41	31.41
TraesCS2A01G127100.1	Wheat	cytosol	30.13	30.13
Os03t0353400-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.77	30.0
Os07t0661400-01	Rice	plastid	29.49	29.87
EER99855	Sorghum	cytosol	29.49	27.88
Zm00001d007097_P001	Maize	cytosol, plastid	28.21	27.67
Zm00001d048165_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	26.92	25.77
TraesCS2B01G148900.1	Wheat	cytosol	30.77	25.67
Zm00001d047470_P005	Maize	plastid	28.21	25.43

Protein Annotations

EMBL:JX683413	EnsemblPlants:PGSC0003DMT400076750	EnsemblPlantsGene:PGSC0003DMG400029848	EntrezGene:102604076	InterPro:Ataxin-2_C	PANTHER:PTHR33790
PANTHER:PTHR33790:SF1	PFAM:PF07145	PGSC:PGSC0003DMG400029848	ProteinID:AFX66978	ProteinID:AFX66978.1	RefSeq:XP_006351285.1
UniParc:UPI0002966CC0	UniProt:M1CXC2	MapMan:35.1	:	:	:

Description

Dehydration-induced protein ERD15 [Source:PGSC_GENE;Acc:PGSC0003DMG400029848]

Coordinates

chr10:-:58010999..58013140

Molecular Weight (calculated)

17532.4 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.513

Length

156 amino acids

Sequence
(BLAST)

001: MALVSGGRST LNPNAPLFVP SFVRQVEDFS PEWWNLVTTS TWFHDYWMSQ NQGEEYGAGN DVADLLPENI DLNVDEDILN MEAQFEEFLQ SSENGQQGIK
101: SSLYGVNAMP QYGLPSDALI RTLSSPRSPI GPPKYFEKAS KIVSPRNSFR SIQQPR

Best Arabidopsis Sequence Match ( AT2G41430.5 )
(BLAST)

001: MAMVSGRRST LNPDAPLFIP AAVRQVEDFS PEWWQLVTTS TWYPDYWISQ QQQGADGFYD NGENENGGGH IDVADLLPES FDFDDMEDFF DTDAAEFDQG
101: FDGRMYYQAP SEFGFGKNGE MVKKSSGNRS PRSIVEPAKY AEKPAKWGNQ RVAAAPRNIH QPR

Arabidopsis Description

ERD15LSR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.