Factsheet for VIT_15s0024g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 3
mitochondrion 2
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, mitochondrion, peroxisome, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02790.t01	Wine grape	endoplasmic reticulum, vacuole	83.64	8.58
CDY68077	Canola	mitochondrion	1.82	0.94
VIT_13s0047g00920.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_15s0024g01090	EMBL:FN596748	EnsemblPlants:VIT_15s0024g01090.t01	EnsemblPlantsGene:VIT_15s0024g01090	Gene3D:3.20.20.140	GO:GO:0003674
GO:GO:0003824	GO:GO:0016787	GO:GO:0016810	InterPro:Amidohydro-rel	InterPro:IPR011059	InterPro:Metal-dep_hydrolase_composite
PANTHER:PTHR11647	PANTHER:PTHR11647:SF1	PFAM:PF01979	ProteinID:CCB62162	ProteinID:CCB62162.1	SUPFAM:SSF51338
UniParc:UPI000210A265	UniProt:F6I5E4	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr15:+:2137478..2137761

Molecular Weight (calculated)

6239.6 Da

IEP (calculated)

8.506

GRAVY (calculated)

-0.127

Length

55 amino acids

Sequence
(BLAST)

1: MVESGQISVT DYVRITSTEC ARIFNMYPRK GAILAGSDAD IIILNPNWMN LHRQK

Best Arabidopsis Sequence Match ( AT5G12200.1 )
(BLAST)

001: MALDAFFFIV SLFLLFPSPS ASESTTQFCS AGRENGVGSC GVSSTRILIK GGTVVNAHHQ ELADVYVENG IIVAVQPNIK VGDEVTVLDA TGKFVMPGGI
101: DPHTHLAMEF MGTETIDDFF SGQAAALAGG TTMHIDFVIP VNGNLVAGFE AYENKSRESC MDYGFHMAIT KWDEGVSRDM EMLVKEKGIN SFKFFLAYKG
201: SLMVTDDLLL EGLKRCKSLG ALAMVHAENG DAVFEGQKRM IELGITGPEG HALSRPPVLE GEATARAIRL ARFINTPLYV VHVMSVDAMD EIAKARKSGQ
301: KVIGEPVVSG LILDDHWLWD PDFTIASKYV MSPPIRPVGH GKALQDALST GILQLVGTDH CTFNSTQKAL GLDDFRRIPN GVNGLEERMH LIWDTMVESG
401: QLSATDYVRI TSTECARIFN IYPRKGAILA GSDADIIILN PNSSYEISSK SHHSRSDTNV YEGRRGKGKV EVTIAGGRIV WENEELKVVP RSGKYIEMPP
501: FSYLFDGIEK SDANYLSSLR APVKRVRTEA T

Arabidopsis Description

PYD2Dihydropyrimidinase [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.