Factsheet for VIT_19s0138g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g10020.t01	Wine grape	cytosol	22.54	11.07
VIT_04s0044g01280.t01	Wine grape	plastid	44.37	3.26
VIT_06s0004g01270.t01	Wine grape	cytosol, mitochondrion, nucleus, plasma membrane	45.07	3.26
VIT_13s0156g00210.t01	Wine grape	mitochondrion	42.96	3.13
VIT_06s0004g01200.t01	Wine grape	cytosol	30.28	2.35
VIT_19s0138g00120.t01	Wine grape	mitochondrion, plasma membrane	14.08	1.14
VIT_15s0024g01490.t01	Wine grape	cytosol, peroxisome, plastid	2.82	1.04
VIT_17s0000g10010.t01	Wine grape	cytosol	11.97	1.04
VIT_12s0028g03720.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	9.86	1.01
VIT_00s0265g00050.t01	Wine grape	cytosol	11.27	0.97
VIT_12s0028g00400.t01	Wine grape	plasma membrane	9.86	0.81
Zm00001d050344_P001	Maize	cytosol	1.41	0.8
Zm00001d047143_P001	Maize	cytosol	0.7	0.23
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
Zm00001d045776_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.270	MapMan:35.1	ProteinID:CCB44528	ProteinID:CCB44528.1	UniProt:F6GX42	EMBL:FN594960
GO:GO:0000148	GO:GO:0003674	GO:GO:0003824	GO:GO:0003843	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005975	GO:GO:0006075	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:IPR023175	PFAM:PF04652
PANTHER:PTHR12741	PANTHER:PTHR12741:SF22	UniParc:UPI000210A8FF	ArrayExpress:VIT_19s0138g00110	EnsemblPlantsGene:VIT_19s0138g00110	EnsemblPlants:VIT_19s0138g00110.t01
InterPro:VPS_Vta1/CALS_N	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:13989254..13993001

Molecular Weight (calculated)

16416.2 Da

IEP (calculated)

7.810

GRAVY (calculated)

-0.811

Length

142 amino acids

Sequence
(BLAST)

001: MSEITVADPI HETNTTRALT TSTSTSHDTS PEPFDSERVP VTLGTDIRSF LRVANRVEPH DPRIAYLCRV HAFEMAHIKD TYSTGRGVRQ FKTALLQRLE
101: QDEVTTIAKR KEKSDLGELR RVHRHYKNII DQRSDSWDLE NR

Best Arabidopsis Sequence Match ( AT3G14780.1 )
(BLAST)

001: MSSNEIAPVD PTDVFLDMDP ILPEDSPATS LFTRPLALKE QYVWEPYDSE KLPETLASGI QRFLRVANLV ESDDPRVAYL CRFYTFEEAH RIDSRSNGRG
101: VRQFKNSLLR RLEKDDEFTI RRRKEINDHK ELKRVYHAYN EYIIRHGASF NLDNSQQEKL INARSIASVL YEILRKIESS MGRASTPESI QLNRDEEIGE
201: LLDMDTSMEE TNKINSDETF VDQKAELVVE KSKVLEDERL TQMFQGDHQY LTQDEKDDIY KEEVQIKKDK RFAYGSMKAV PSLFYEDKYL ETQEKLNKLE
301: KKIEEMELKL KDVDFWTNMM QNMFPDQVPP SMRANQTDNN KNDKLSL

Arabidopsis Description

Callose synthase [Source:UniProtKB/TrEMBL;Acc:Q8GW77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.