Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G032830.1 | Barley | plastid | 42.62 | 78.0 |
| TraesCS2D01G183100.1 | Wheat | cytosol, mitochondrion, plastid | 39.34 | 72.0 |
| Zm00001d047282_P001 | Maize | mitochondrion | 53.01 | 67.83 |
| Os03t0417800-01 | Rice | extracellular | 42.62 | 67.24 |
| Zm00001d048795_P001 | Maize | mitochondrion | 34.97 | 56.64 |
| KXG39652 | Sorghum | mitochondrion | 61.75 | 50.9 |
| Zm00001d040773_P001 | Maize | plastid | 39.34 | 48.32 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 24.04 | 27.33 |
Protein Annotations
| EnsemblPlants:Zm00001d029527_P003 | EnsemblPlants:Zm00001d029527_T003 | EnsemblPlantsGene:Zm00001d029527 | EntrezGene:100283729 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 |
| ProteinID:ONL98914.1 | SEG:seg | UniParc:UPI0004DEB3B9 | UniProt:A0A1D6K5R3 | MapMan:20.1.5.1.3 | : |
Description
Protein SPIRAL1
Coordinates
chr1:-:74787608..74790957
Molecular Weight (calculated)
18834.1 Da
IEP (calculated)
11.138
GRAVY (calculated)
-0.463
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSDGQLEV LSPSIPGSRA HRLLFLYKTI RRLPFGLHFD FRAQKREGRS SRSPGDPAAG RPHTSSSLPS FLFPTIKMSR GGSAGGGQSS LGYLFGSGEP
101: PKPAVAPAVS APPAAAGAPP AEKPPAAKPD GTSQIAAGVT SQTNNYHRAD GQNTGNFLTD RPSTKVHAAP GGGSSLGYLF GGN
101: PKPAVAPAVS APPAAAGAPP AEKPPAAKPD GTSQIAAGVT SQTNNYHRAD GQNTGNFLTD RPSTKVHAAP GGGSSLGYLF GGN
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.