Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21771 | Canola | extracellular | 82.8 | 81.91 |
| Bra026696.1-P | Field mustard | nucleus | 54.84 | 80.95 |
| CDX81792 | Canola | extracellular | 78.49 | 77.66 |
| CDY40009 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.34 | 75.53 |
| CDY35133 | Canola | endoplasmic reticulum, extracellular, vacuole | 75.27 | 74.47 |
| Bra026013.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 73.12 | 72.34 |
| CDX96798 | Canola | extracellular | 69.89 | 72.22 |
| Bra016623.1-P | Field mustard | extracellular | 68.82 | 71.11 |
Protein Annotations
| MapMan:11.10.1.1.1 | EntrezGene:838266 | UniProt:A0A178WKL7 | ProteinID:AAF99837.1 | ProteinID:AEE29525.1 | ArrayExpress:AT1G16950 |
| EnsemblPlantsGene:AT1G16950 | RefSeq:AT1G16950 | TAIR:AT1G16950 | RefSeq:AT1G16950-TAIR-G | EnsemblPlants:AT1G16950.1 | TAIR:AT1G16950.1 |
| EMBL:BT010799 | EMBL:BT011278 | InterPro:CEP13/CEP14 | GO:GO:0003674 | GO:GO:0005102 | GO:GO:0005179 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0006970 | GO:GO:0006995 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0010469 | GO:GO:0048046 | GO:GO:0060359 | GO:GO:0090548 | GO:GO:1901698 | GO:GO:1902025 |
| GO:GO:2000280 | RefSeq:NP_173139.1 | ProteinID:OAP17682.1 | PO:PO:0007616 | PO:PO:0009029 | PANTHER:PTHR37180 |
| UniProt:Q9FZ54 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A443F | SEG:seg | : |
Description
CEP13Precursor of CEP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ54]
Coordinates
chr1:+:5795879..5796666
Molecular Weight (calculated)
9994.2 Da
IEP (calculated)
9.831
GRAVY (calculated)
-0.147
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MARPRISISM ICLLILIVGF VLQSSQARKV LVPYGTSKGL FLSALPKGNV PPSGPSDKGH TSPPDDTDQR MVPENSPEIY RRLESVPSPG VGH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.