Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035497.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 64.18 | 67.19 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 64.18 | 67.19 |
| Solyc08g077410.2.1 | Tomato | cytosol, nucleus, plastid | 35.07 | 41.23 |
| KRH28234 | Soybean | cytosol, mitochondrion, nucleus | 37.31 | 37.88 |
| AT4G28060.1 | Thale cress | mitochondrion | 20.15 | 34.62 |
| AT5G57815.1 | Thale cress | cytosol | 19.4 | 33.33 |
| Os02t0791400-01 | Rice | cytosol | 16.42 | 25.58 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 23.88 | 16.75 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | EntrezGene:840165 | ProteinID:AAF25969.1 | ProteinID:AEE31520.1 | ArrayExpress:AT1G32710 |
| EnsemblPlantsGene:AT1G32710 | RefSeq:AT1G32710 | TAIR:AT1G32710 | RefSeq:AT1G32710-TAIR-G | EnsemblPlants:AT1G32710.1 | TAIR:AT1G32710.1 |
| Unigene:At.51887 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:IPR036549 | RefSeq:NP_174548.1 | PFAM:PD015172 | PFAM:PF02297 |
| PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF29 | UniProt:Q9LPJ2 | SUPFAM:SSF47694 | UniParc:UPI0000162F59 |
Description
Putative cytochrome c oxidase subunit 6b-like [Source:UniProtKB/Swiss-Prot;Acc:Q9LPJ2]
Coordinates
chr1:+:11833113..11833706
Molecular Weight (calculated)
15481.0 Da
IEP (calculated)
8.641
GRAVY (calculated)
-1.292
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAQMDPHD KMRSRDISKV ARGQQAPRPA HTPGTVSPPP ENEATFRAKR GDSGRETDAA VEERFPVTNE TRHCFNRFMQ YHKCIEKNGR DANDCNNLRD
101: YVRSICPEEL VSKIWLKSGR NKESQGHYQR QYED
101: YVRSICPEEL VSKIWLKSGR NKESQGHYQR QYED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.