Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G28060.1 | Thale cress | mitochondrion | 93.59 | 93.59 |
| KRH18933 | Soybean | cytosol | 83.33 | 84.42 |
| Solyc07g006270.2.1 | Tomato | cytosol | 83.33 | 84.42 |
| OQU85293 | Sorghum | cytosol | 78.21 | 79.22 |
| Os04t0498200-01 | Rice | cytosol | 78.21 | 79.22 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 78.21 | 79.22 |
| GSMUA_Achr3P04880_001 | Banana | cytosol | 76.92 | 77.92 |
| KRH02965 | Soybean | cytosol | 82.05 | 73.56 |
| CDY19008 | Canola | extracellular | 92.31 | 73.47 |
| PGSC0003DMT400029025 | Potato | mitochondrion | 84.62 | 70.21 |
| HORVU7Hr1G032110.2 | Barley | cytosol | 57.69 | 62.5 |
| HORVU5Hr1G020140.1 | Barley | cytosol | 57.69 | 61.64 |
| HORVU2Hr1G085960.3 | Barley | cytosol | 60.26 | 55.29 |
| Zm00001d051055_P003 | Maize | mitochondrion | 58.97 | 30.67 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 73.08 | 29.84 |
| AT1G32710.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 33.33 | 19.4 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | EntrezGene:835891 | UniProt:A0A178UHL9 | EMBL:AB013396 | ProteinID:AED96955.1 |
| EMBL:AF412096 | EMBL:AK117656 | EMBL:AK228364 | ArrayExpress:AT5G57815 | EnsemblPlantsGene:AT5G57815 | RefSeq:AT5G57815 |
| TAIR:AT5G57815 | RefSeq:AT5G57815-TAIR-G | EnsemblPlants:AT5G57815.1 | TAIR:AT5G57815.1 | EMBL:AY086201 | EMBL:AY113061 |
| InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | InterPro:IPR036549 | RefSeq:NP_568867.1 | ProteinID:OAO92694.1 | PFAM:PD015172 | PFAM:PF02297 |
| PIRSF:PIRSF000278 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51808 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | UniProt:Q945L0 | SUPFAM:SSF47694 | UniParc:UPI00000AC238 | : |
Description
COX6B-2Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UHL9]
Coordinates
chr5:+:23426647..23427911
Molecular Weight (calculated)
9254.7 Da
IEP (calculated)
5.138
GRAVY (calculated)
-1.028
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EESNDCERFA KYYRALCPGE WVDKWNEQRE SGTFPGPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.