Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P04880_001 | Banana | cytosol | 84.42 | 84.42 |
| OQU85293 | Sorghum | cytosol | 84.42 | 84.42 |
| AT5G57815.1 | Thale cress | cytosol | 84.42 | 83.33 |
| Bra026287.1-P | Field mustard | cytosol | 84.42 | 83.33 |
| CDX89207 | Canola | cytosol | 84.42 | 83.33 |
| AT4G28060.1 | Thale cress | mitochondrion | 84.42 | 83.33 |
| KRH18933 | Soybean | cytosol | 83.12 | 83.12 |
| Bra024231.1-P | Field mustard | cytosol | 83.12 | 82.05 |
| CDY29877 | Canola | cytosol | 83.12 | 82.05 |
| Os04t0498200-01 | Rice | cytosol | 81.82 | 81.82 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 79.22 | 79.22 |
| PGSC0003DMT400029025 | Potato | mitochondrion | 94.81 | 77.66 |
| KRH02965 | Soybean | cytosol | 80.52 | 71.26 |
| HORVU7Hr1G032110.2 | Barley | cytosol | 64.94 | 69.44 |
| HORVU5Hr1G020140.1 | Barley | cytosol | 63.64 | 67.12 |
| CDY19008 | Canola | extracellular | 83.12 | 65.31 |
| HORVU2Hr1G085960.3 | Barley | cytosol | 67.53 | 61.18 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 84.42 | 37.14 |
| Solyc12g057120.1.1 | Tomato | plastid | 79.22 | 34.27 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 80.52 | 33.51 |
| Zm00001d051055_P003 | Maize | mitochondrion | 62.34 | 32.0 |
| Solyc08g077410.2.1 | Tomato | cytosol, nucleus, plastid | 23.38 | 15.79 |
Protein Annotations
| EnsemblPlants:Solyc07g006270.2.1 | EnsemblPlantsGene:Solyc07g006270.2 | Gene3D:1.10.10.140 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | InterPro:IPR036549 | PANTHER:PTHR11387 |
| PANTHER:PTHR11387:SF30 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PIRSF:PIRSF000278 | SUPFAM:SSF47694 |
| UniParc:UPI000276C589 | UniProt:K4CB98 | MapMan:2.4.5.1.7 | : | : | : |
Description
Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:K4CB98]
Coordinates
chr7:+:1061674..1066667
Molecular Weight (calculated)
8931.5 Da
IEP (calculated)
7.290
GRAVY (calculated)
-0.699
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEIELKTAP ADFRFPTTNQ TRHCFTRYVE FHRCVAAKGD EAADCARFAK YYRALCPGEW VDKWNEQREN GTFPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.