Factsheet for Solyc04g074550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079179	Potato	nucleus	94.59	94.59
Solyc07g006270.2.1	Tomato	cytosol	33.51	80.52
Solyc12g057120.1.1	Tomato	plastid	65.95	68.54
CDX91679	Canola	cytosol, nucleus, plastid	41.62	67.54
CDY41480	Canola	cytosol, mitochondrion, nucleus	42.16	66.1
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	53.51	56.57
KRH72388	Soybean	endoplasmic reticulum	51.89	55.17
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	47.03	53.7
CDY71646	Canola	cytosol, nucleus, plastid	47.03	53.7
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	49.73	53.49
Os03t0390400-01	Rice	mitochondrion	48.65	53.25
Zm00001d029393_P001	Maize	plastid	49.19	52.91
TraesCS2A01G164000.1	Wheat	mitochondrion	44.86	52.87
CDY04815	Canola	nucleus	46.49	52.76
KXG36718	Sorghum	nucleus	48.11	52.05
TraesCS2B01G189900.1	Wheat	golgi	44.86	51.23
TraesCS2D01G171000.1	Wheat	golgi	44.86	51.23
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	45.41	50.0
HORVU2Hr1G029990.1	Barley	plasma membrane	44.32	49.1
CDY46649	Canola	cytosol, nucleus, plastid	48.65	48.65
CDY00453	Canola	cytosol, nucleus, plastid	48.11	48.11
GSMUA_Achr8P17630_001	Banana	nucleus	44.86	47.43
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	48.65	47.12
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	47.03	36.4
VIT_13s0067g03800.t01	Wine grape	mitochondrion	45.95	35.42
Zm00001d047218_P002	Maize	nucleus	44.86	28.04
Solyc08g077410.2.1	Tomato	cytosol, nucleus, plastid	11.89	19.3

Protein Annotations

EnsemblPlants:Solyc04g074550.2.1	EnsemblPlantsGene:Solyc04g074550.2	Gene3D:1.10.10.140	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	InterPro:IPR036549	PANTHER:PTHR11387
PANTHER:PTHR11387:SF30	PFAM:PD015172	PFAM:PF02297	PFscan:PS51808	SEG:seg	SUPFAM:SSF47694
UniParc:UPI0002765648	UniProt:K4BTZ3	MapMan:2.4.5.1.7	:	:	:

Description

Cytochrome c oxidase subunit 6b-1 [Source:Projected from Arabidopsis thaliana (AT1G22450) UniProtKB/Swiss-Prot;Acc:Q9S7L9]

Coordinates

chr4:+:60530205..60535908

Molecular Weight (calculated)

20185.8 Da

IEP (calculated)

4.070

GRAVY (calculated)

-0.819

Length

185 amino acids

Sequence
(BLAST)

001: MAAVDTSNVA SLSEQYLLKD QEEKSPMTAK PVEETEVKTP SAAPAEEVLS KTEEAPVVES IKTAPAPEES SEAVTESAEA SPPVEASSDE SSESTEDETS
101: GDQESAVETP AIKLETAPAD FRFPTTNQSR HCFTRYVEYH RCTAAKGEGA PECDKFAKYY RSLCPGEWVD RWNEQRENGT FPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.