Factsheet for Os03t0390400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

mitochondrion: 12746528
mitochondrion: 19010998
mitochondrion: 19217306
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 12746528 doi

JL Heazlewood, KA Howell, J Whelan, AH Millar

Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19217306 doi

X Chen, Y Wang, J Li, A Jiang, Y Cheng, W Zhang

Department of Biochemistry and Molecular Biology, Nanjing Agricultural University, Weigang, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0498200-01	Rice	cytosol	37.28	81.82
CDX91679	Canola	cytosol, nucleus, plastid	47.34	70.18
CDY41480	Canola	cytosol, mitochondrion, nucleus	48.52	69.49
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	69.23	68.02
Zm00001d029393_P001	Maize	plastid	68.05	66.86
Os02t0791400-01	Rice	cytosol	30.77	60.47
GSMUA_Achr8P17630_001	Banana	nucleus	57.4	55.43
CDY04815	Canola	nucleus	52.66	54.6
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	52.07	54.32
CDY71646	Canola	cytosol, nucleus, plastid	52.07	54.32
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	53.85	54.17
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	53.85	52.0
KRH72388	Soybean	endoplasmic reticulum	53.25	51.72
CDY46649	Canola	cytosol, nucleus, plastid	56.21	51.35
CDY00453	Canola	cytosol, nucleus, plastid	55.62	50.81
Solyc12g057120.1.1	Tomato	plastid	52.66	50.0
PGSC0003DMT400079179	Potato	nucleus	53.85	49.19
Solyc04g074550.2.1	Tomato	nucleus, plastid	53.25	48.65
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	52.66	46.6
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	51.48	46.03
Zm00001d047218_P002	Maize	nucleus	66.27	37.84
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	47.93	33.89
VIT_13s0067g03800.t01	Wine grape	mitochondrion	46.15	32.5

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	EntrezGene:4333018	ProteinID:AAR06368.1	EMBL:AB025187	ProteinID:ABF96356.1
EMBL:AK120174	ProteinID:BAB12338.1	ProteinID:BAF12189.1	ProteinID:BAS84515.1	ncoils:Coil	InterPro:Cyt_c_oxidase_su6B
InterPro:Cyt_c_oxidase_su6B_sf	ProteinID:EAZ27178.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009651
GO:GO:0016020	InterPro:IPR036549	EnsemblPlantsGene:Os03g0390400	EnsemblPlants:Os03t0390400-01	PFAM:PD015172	PFAM:PF02297
PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	UniProt:Q9SXV0	SUPFAM:SSF47694	UniParc:UPI000009FE1E
RefSeq:XP_015630536.1	SEG:seg	:	:	:	:

Description

cytochrome c oxidase subunit VIb-1Similar to Cytochrome c oxidase subunit 6b. (Os03t0390400-01)

Coordinates

chr3:+:15637867..15642502

Molecular Weight (calculated)

18913.2 Da

IEP (calculated)

3.967

GRAVY (calculated)

-1.011

Length

169 amino acids

Sequence
(BLAST)

001: MAAEAKAPSL AEEYSLPPQE APVEKAVEDK PQEAESISVT NDETPQADET ATAVEVNPET SEVQEVADKS EVEDTNPAAE ETNETAEEEA EEKPEIKIET
101: APADFRFPTT NQTRHCFTRY VEYHRCVAAK GEDAPECDKF AKYYRSLCPG EWVERWNEQR ENGTFPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.