Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71646 | Canola | cytosol, nucleus, plastid | 88.96 | 89.51 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 57.06 | 81.58 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 57.67 | 79.66 |
| CDX89207 | Canola | cytosol | 35.58 | 74.36 |
| CDY29877 | Canola | cytosol | 35.58 | 74.36 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 72.39 | 63.78 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 71.78 | 63.24 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 70.55 | 60.21 |
| CDY19008 | Canola | extracellular | 34.97 | 58.16 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 53.37 | 55.41 |
| TraesCS2D01G171000.1 | Wheat | golgi | 53.99 | 54.32 |
| TraesCS2B01G189900.1 | Wheat | golgi | 53.99 | 54.32 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 57.67 | 53.71 |
| Os03t0390400-01 | Rice | mitochondrion | 54.6 | 52.66 |
| KRH72388 | Soybean | endoplasmic reticulum | 55.83 | 52.3 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 53.37 | 52.1 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 54.6 | 51.74 |
| Zm00001d029393_P001 | Maize | plastid | 53.99 | 51.16 |
| Solyc12g057120.1.1 | Tomato | plastid | 55.83 | 51.12 |
| KXG36718 | Sorghum | nucleus | 52.76 | 50.29 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 53.99 | 50.29 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 50.31 | 48.81 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 56.44 | 48.68 |
| PGSC0003DMT400079179 | Potato | nucleus | 53.37 | 47.03 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 52.76 | 46.49 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 53.99 | 36.82 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 39.26 | 36.57 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 52.15 | 35.42 |
| Zm00001d047218_P002 | Maize | nucleus | 48.47 | 26.69 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 20.86 | 26.56 |
Protein Annotations
| EnsemblPlants:CDY04815 | EnsemblPlantsGene:GSBRNA2T00119517001 | Gene3D:1.10.10.140 | GO:A0A078ESA7 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | InterPro:IPR036549 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | ProteinID:CDY04815 |
| ProteinID:CDY04815.1 | SEG:seg | SUPFAM:SSF47694 | UniParc:UPI0004EE3601 | MapMan:2.4.5.1.7 | : |
Description
BnaC05g17740D
Coordinates
chrLK031957:-:1020323..1021933
Molecular Weight (calculated)
18345.7 Da
IEP (calculated)
4.080
GRAVY (calculated)
-1.002
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESVSSQTP SLSEQYHLEK EVKPVEVAPE ITTTTQEVEA KEESPAEEAV EDKSKSPEVT SEEAPAATEE APANEENTSE EVAEETPDEI KLETAPADFR
101: FPTTNQTRHC FTRYIEYHRC VAAKGDEAPE CDKFSKFYRS LCPGEWVDRW NEQRENGTFP GPL
101: FPTTNQTRHC FTRYIEYHRC VAAKGDEAPE CDKFSKFYRS LCPGEWVDRW NEQRENGTFP GPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.