Factsheet for TraesCS2D01G171000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G189900.1	Wheat	golgi	98.77	98.77
HORVU2Hr1G029990.1	Barley	plasma membrane	95.06	92.22
TraesCS2A01G164000.1	Wheat	mitochondrion	87.04	89.81
KXG36718	Sorghum	nucleus	74.69	70.76
CDX91679	Canola	cytosol, nucleus, plastid	46.91	66.67
CDY41480	Canola	cytosol, mitochondrion, nucleus	47.53	65.25
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	56.17	54.17
CDY04815	Canola	nucleus	54.32	53.99
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	53.09	53.09
CDY71646	Canola	cytosol, nucleus, plastid	53.09	53.09
GSMUA_Achr8P17630_001	Banana	nucleus	56.17	52.0
CDY00453	Canola	cytosol, nucleus, plastid	58.02	50.81
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	54.32	50.29
CDY46649	Canola	cytosol, nucleus, plastid	57.41	50.27
Solyc12g057120.1.1	Tomato	plastid	54.32	49.44
KRH72388	Soybean	endoplasmic reticulum	52.47	48.85
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	56.79	48.17
PGSC0003DMT400079179	Potato	nucleus	53.09	46.49
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	53.7	46.03
Solyc04g074550.2.1	Tomato	nucleus, plastid	51.23	44.86
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	50.0	33.89
VIT_13s0067g03800.t01	Wine grape	mitochondrion	49.38	33.33

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009651	GO:GO:0016020	InterPro:IPR036549	PFAM:PD015172	PFAM:PF02297
PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	EnsemblPlantsGene:TraesCS2D01G171000	EnsemblPlants:TraesCS2D01G171000.1
TIGR:cd00926	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:114770570..114772929

Molecular Weight (calculated)

18085.5 Da

IEP (calculated)

4.080

GRAVY (calculated)

-0.896

Length

162 amino acids

Sequence
(BLAST)

001: MAAEGKVPTL AEEYSLPPKE VSVEKSATST VAEVVPQKDT ETSPADETAA AVEEKSETPE VKEPEAEETV PAAEESDEAP EETEEKPEIV IETAPADFRF
101: PTTNQTRHCF TRYVEYHRCV AAKGDDAPEC EKFAKYYRSL CPSEWVERWN EQRENGTFPG PL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.