CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 3
cytosol 1
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	KRH14106	AT5G35750.1	18642946
AT1G22450.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	86.21	85.71
KRH18933	Soybean	cytosol	36.78	83.12
KRH02965	Soybean	cytosol	38.51	77.01
CDX91679	Canola	cytosol, nucleus, plastid	43.1	65.79
CDY41480	Canola	cytosol, mitochondrion, nucleus	44.25	65.25
CDY04815	Canola	nucleus	52.3	55.83
Zm00001d029393_P001	Maize	plastid	53.45	54.07
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	53.45	54.07
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	50.0	53.7
CDY71646	Canola	cytosol, nucleus, plastid	50.0	53.7
PGSC0003DMT400079179	Potato	nucleus	56.9	53.51
TraesCS2A01G164000.1	Wheat	mitochondrion	48.28	53.5
Os03t0390400-01	Rice	mitochondrion	51.72	53.25
TraesCS2B01G189900.1	Wheat	golgi	49.43	53.09
TraesCS2D01G171000.1	Wheat	golgi	48.85	52.47
Solyc12g057120.1.1	Tomato	plastid	53.45	52.25
KXG36718	Sorghum	nucleus	51.15	52.05
Solyc04g074550.2.1	Tomato	nucleus, plastid	55.17	51.89
GSMUA_Achr8P17630_001	Banana	nucleus	51.72	51.43
HORVU2Hr1G029990.1	Barley	plasma membrane	48.85	50.9
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	48.85	50.6
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	52.87	48.68
CDY00453	Canola	cytosol, nucleus, plastid	51.15	48.11
CDY46649	Canola	cytosol, nucleus, plastid	51.15	48.11
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	51.15	46.6
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	52.87	38.49
VIT_13s0067g03800.t01	Wine grape	mitochondrion	52.3	37.92
Zm00001d047218_P002	Maize	nucleus	45.4	26.69
KRH28234	Soybean	cytosol, mitochondrion, nucleus	19.54	25.76

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	EMBL:ACUP02001204	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	EnsemblPlantsGene:GLYMA_02G208900
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	UniProt:I1JGV5
InterPro:IPR036549	EnsemblPlants:KRH72388	ProteinID:KRH72388	ProteinID:KRH72388.1	PFAM:PD015172	PFAM:PF02297
PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI00023BC2AB	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:39412891..39417954

Molecular Weight (calculated)

19364.9 Da

IEP (calculated)

4.102

GRAVY (calculated)

-0.914

Length

174 amino acids

Sequence
(BLAST)

001: MAETADKSQS LAEEYYVNDK QTTVVEKAVE VKEVENPKVA ASEEPVAEKT VEETTPVAPA VAQESSEVTP PPAEESTEEQ SSGNVEENSG NEDVAEETPE
101: IKLETAPADF RFPTTNQTRH CFTRYIEYHR CVAAKGEGAP ECDKFAKYYR SLCPGEWVDR WNEQRENGTF PGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.