Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 3
- cytosol 1
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72388 | Soybean | endoplasmic reticulum | 85.71 | 86.21 |
| KRH18933 | Soybean | cytosol | 35.43 | 80.52 |
| KRH02965 | Soybean | cytosol | 37.14 | 74.71 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 43.43 | 66.67 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 44.57 | 66.1 |
| CDY04815 | Canola | nucleus | 53.71 | 57.67 |
| Zm00001d029393_P001 | Maize | plastid | 56.57 | 57.56 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 56.57 | 57.56 |
| Solyc12g057120.1.1 | Tomato | plastid | 57.14 | 56.18 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 52.0 | 56.17 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 52.0 | 56.17 |
| PGSC0003DMT400079179 | Potato | nucleus | 57.71 | 54.59 |
| TraesCS2D01G171000.1 | Wheat | golgi | 50.29 | 54.32 |
| TraesCS2B01G189900.1 | Wheat | golgi | 50.29 | 54.32 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 48.57 | 54.14 |
| Os03t0390400-01 | Rice | mitochondrion | 52.0 | 53.85 |
| KXG36718 | Sorghum | nucleus | 52.57 | 53.8 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 56.57 | 53.51 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 52.57 | 52.57 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 49.71 | 52.1 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 49.71 | 51.79 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 55.43 | 51.32 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 50.29 | 47.57 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 50.29 | 47.57 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 51.43 | 47.12 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 53.71 | 39.33 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 53.14 | 38.75 |
| KRH28234 | Soybean | cytosol, mitochondrion, nucleus | 20.57 | 27.27 |
| Zm00001d047218_P002 | Maize | nucleus | 45.71 | 27.03 |
Protein Annotations
| Gene3D:1.10.10.140 | EntrezGene:100794661 | MapMan:2.4.5.1.7 | EMBL:ACUP02009013 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf |
| EnsemblPlantsGene:GLYMA_14G177100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| UniProt:I1MAW4 | InterPro:IPR036549 | ProteinID:KRH16775.1 | EnsemblPlants:KRH16776 | ProteinID:KRH16776 | ProteinID:KRH16776.1 |
| PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 |
| UniParc:UPI000233AFBA | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr14:+:43661177..43665659
Molecular Weight (calculated)
19477.0 Da
IEP (calculated)
4.058
GRAVY (calculated)
-0.947
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETAVDKSQ SLAEEYYVKD KQTAVVEKPV EVKEVENPEE AASEEPVAEK TVEETTPVAP AVAQESSEVT PPPAEESTEE QSSGNVEENS GNEDAAEETP
101: EIKLETAPAD FRFPTTNQTR HCFTRYVEYH RCVAAKGEGA PECDKFAKYY RSLCPGEWID RWNEQRENGT FPGPL
101: EIKLETAPAD FRFPTTNQTR HCFTRYVEYH RCVAAKGEGA PECDKFAKYY RSLCPGEWID RWNEQRENGT FPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.