CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	CDX74635	AT5G35750.1	18642946
AT1G22450.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00453	Canola	cytosol, nucleus, plastid	97.84	97.84
CDX91679	Canola	cytosol, nucleus, plastid	49.73	80.7
CDY41480	Canola	cytosol, mitochondrion, nucleus	49.19	77.12
CDY29877	Canola	cytosol	31.89	75.64
CDX89207	Canola	cytosol	31.35	74.36
CDY04815	Canola	nucleus	63.24	71.78
CDY71646	Canola	cytosol, nucleus, plastid	62.16	70.99
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	71.35	69.11
CDY19008	Canola	extracellular	31.35	59.18
TraesCS2B01G189900.1	Wheat	golgi	50.81	58.02
TraesCS2D01G171000.1	Wheat	golgi	50.27	57.41
Os03t0390400-01	Rice	mitochondrion	51.35	56.21
TraesCS2A01G164000.1	Wheat	mitochondrion	47.03	55.41
HORVU2Hr1G029990.1	Barley	plasma membrane	48.11	53.29
KRH72388	Soybean	endoplasmic reticulum	48.11	51.15
Solyc12g057120.1.1	Tomato	plastid	48.65	50.56
KXG36718	Sorghum	nucleus	46.49	50.29
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	47.57	50.29
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	45.95	49.42
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	50.27	49.21
Zm00001d029393_P001	Maize	plastid	45.41	48.84
PGSC0003DMT400079179	Potato	nucleus	48.65	48.65
Solyc04g074550.2.1	Tomato	nucleus, plastid	48.65	48.65
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	43.78	48.21
GSMUA_Achr8P17630_001	Banana	nucleus	45.41	48.0
CDX92861	Canola	cytosol, extracellular, mitochondrion, plastid	35.14	37.14
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	45.41	35.15
VIT_13s0067g03800.t01	Wine grape	mitochondrion	44.32	34.17
CDY44662	Canola	cytosol, mitochondrion, nucleus	20.0	28.91
Zm00001d047218_P002	Maize	nucleus	43.78	27.36

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	GO:A0A078IBE5	UniProt:A0A078IBE5	EnsemblPlants:CDY46649	ProteinID:CDY46649
ProteinID:CDY46649.1	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSBRNA2T00085937001	InterPro:IPR036549	PFAM:PD015172	PFAM:PF02297
PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI0004EE309C	SEG:seg

Description

BnaA07g10470DBnaA07g10470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBE5]

Coordinates

chrLK032680:+:126213..127795

Molecular Weight (calculated)

20374.7 Da

IEP (calculated)

3.929

GRAVY (calculated)

-0.897

Length

185 amino acids

Sequence
(BLAST)

001: MAESVASQTP SLSEQYHLEK EVKQDTSAKP VEVAPEVTSQ AEDVSTDKAS EESPAEEAVS AVEDKSESPP ASEEAPPSVV VEDSADETPA AVEESNDDNA
101: SEEVVEETPD EIKLETAPAD FRFPTTNQTR HCFTRYIEYH RCVAAKGDDA PECDKFSKFY RSLCPGEWVD KWNEQRENGT FPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.