Factsheet for HORVU2Hr1G029990.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
WoLF PSORT:	mitochondrion
YLoc:	nucleus

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G171000.1	Wheat	golgi	92.22	95.06
TraesCS2B01G189900.1	Wheat	golgi	91.02	93.83
TraesCS2A01G164000.1	Wheat	mitochondrion	82.63	87.9
KXG36718	Sorghum	nucleus	73.05	71.34
HORVU7Hr1G032110.2	Barley	cytosol	29.94	69.44
CDX91679	Canola	cytosol, nucleus, plastid	45.51	66.67
CDY41480	Canola	cytosol, mitochondrion, nucleus	46.11	65.25
HORVU5Hr1G020140.1	Barley	cytosol	28.14	64.38
HORVU2Hr1G085960.3	Barley	cytosol	31.14	61.18
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	53.89	53.57
CDY04815	Canola	nucleus	52.1	53.37
GSMUA_Achr8P17630_001	Banana	nucleus	55.69	53.14
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	50.9	52.47
CDY71646	Canola	cytosol, nucleus, plastid	50.9	52.47
Solyc12g057120.1.1	Tomato	plastid	53.29	50.0
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	52.1	49.71
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	56.29	49.21
KRH72388	Soybean	endoplasmic reticulum	50.9	48.85
CDY00453	Canola	cytosol, nucleus, plastid	53.89	48.65
CDY46649	Canola	cytosol, nucleus, plastid	53.29	48.11
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	52.69	46.56
PGSC0003DMT400079179	Potato	nucleus	50.9	45.95
Solyc04g074550.2.1	Tomato	nucleus, plastid	49.1	44.32
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	49.1	34.31
VIT_13s0067g03800.t01	Wine grape	mitochondrion	48.5	33.75

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	UniProt:A0A287HJJ5	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009651	GO:GO:0016020	EnsemblPlantsGene:HORVU2Hr1G029990	EnsemblPlants:HORVU2Hr1G029990.1
InterPro:IPR036549	PFAM:PD015172	PFAM:PF02297	PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30
SUPFAM:SSF47694	UniParc:UPI000224AC6C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:109352320..109355347

Molecular Weight (calculated)

18720.3 Da

IEP (calculated)

4.081

GRAVY (calculated)

-0.972

Length

167 amino acids

Sequence
(BLAST)

001: MAAEGKVPTL AEEYSLPPKE VPVEKPAEEK STTSTVAEVV PQKDTETSPA DETAAPVEEK SETPEVKEPE AEEAIPATEE SDEAPEETEE KPEIVIETAP
101: ADFRFPTTNQ TRHCFTRYVE YHRCVAAKGD DAPECEKFAK YYRSLCPSEW VERWNEQREN GTFPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.