Factsheet for Solyc12g057120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	92.7	87.3
Solyc07g006270.2.1	Tomato	cytosol	34.27	79.22
CDX91679	Canola	cytosol, nucleus, plastid	44.38	69.3
CDY41480	Canola	cytosol, mitochondrion, nucleus	45.51	68.64
Solyc04g074550.2.1	Tomato	nucleus, plastid	68.54	65.95
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	56.18	57.14
CDY04815	Canola	nucleus	51.12	55.83
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	50.56	55.56
CDY71646	Canola	cytosol, nucleus, plastid	50.56	55.56
TraesCS2A01G164000.1	Wheat	mitochondrion	48.31	54.78
TraesCS2D01G171000.1	Wheat	golgi	49.44	54.32
KXG36718	Sorghum	nucleus	51.69	53.8
TraesCS2B01G189900.1	Wheat	golgi	48.88	53.7
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	50.56	53.57
Zm00001d029393_P001	Maize	plastid	51.69	53.49
KRH72388	Soybean	endoplasmic reticulum	52.25	53.45
HORVU2Hr1G029990.1	Barley	plasma membrane	50.0	53.29
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	51.12	52.91
Os03t0390400-01	Rice	mitochondrion	50.0	52.66
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	53.93	50.26
CDY00453	Canola	cytosol, nucleus, plastid	51.12	49.19
CDY46649	Canola	cytosol, nucleus, plastid	50.56	48.65
GSMUA_Achr8P17630_001	Banana	nucleus	46.63	47.43
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	46.07	34.31
VIT_13s0067g03800.t01	Wine grape	mitochondrion	44.94	33.33
Zm00001d047218_P002	Maize	nucleus	46.63	28.04
Solyc08g077410.2.1	Tomato	cytosol, nucleus, plastid	14.61	22.81

Protein Annotations

EnsemblPlants:Solyc12g057120.1.1	EnsemblPlantsGene:Solyc12g057120.1	Gene3D:1.10.10.140	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	InterPro:IPR036549	PANTHER:PTHR11387
PANTHER:PTHR11387:SF30	PFAM:PD015172	PFAM:PF02297	PFscan:PS51808	SUPFAM:SSF47694	UniParc:UPI000276A35E
UniProt:K4DG42	MapMan:2.4.5.1.7	:	:	:	:

Description

No Description!

Coordinates

chr12:+:63194905..63197309

Molecular Weight (calculated)

19695.1 Da

IEP (calculated)

4.120

GRAVY (calculated)

-1.001

Length

178 amino acids

Sequence
(BLAST)

001: MAEVDNSKSP SLSEQYLLKE KEEKSTTVAN PVEETEVKAS STAPSEEDTP KTEETPVVES SEAVPATSEE SSGASDSTTP EINEASPPVE AESENHESAD
101: ETPEIKLETA PADFRFPTTN QTRHCFTRYV EYHRCIAAKG EGAPECDKFA KYYRSLCPGE WIDRWNEQRE NGTFPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.