Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91679 | Canola | cytosol, nucleus, plastid | 49.74 | 83.33 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 50.26 | 81.36 |
| AT4G28060.1 | Thale cress | mitochondrion | 31.41 | 76.92 |
| AT5G57815.1 | Thale cress | cytosol | 29.84 | 73.08 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 69.63 | 71.89 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 69.11 | 71.35 |
| CDY04815 | Canola | nucleus | 60.21 | 70.55 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 58.64 | 69.14 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 58.64 | 69.14 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 49.21 | 59.87 |
| TraesCS2D01G171000.1 | Wheat | golgi | 48.17 | 56.79 |
| TraesCS2B01G189900.1 | Wheat | golgi | 48.17 | 56.79 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 49.21 | 56.29 |
| Solyc12g057120.1.1 | Tomato | plastid | 50.26 | 53.93 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 48.17 | 53.49 |
| Os03t0390400-01 | Rice | mitochondrion | 46.6 | 52.66 |
| Zm00001d029393_P001 | Maize | plastid | 47.12 | 52.33 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 51.31 | 51.85 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 47.12 | 51.43 |
| KRH72388 | Soybean | endoplasmic reticulum | 46.6 | 51.15 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 44.5 | 50.6 |
| KXG36718 | Sorghum | nucleus | 43.98 | 49.12 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 47.12 | 48.65 |
| PGSC0003DMT400079179 | Potato | nucleus | 47.12 | 48.65 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 44.5 | 48.57 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 46.07 | 36.82 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 43.98 | 35.0 |
| Zm00001d047218_P002 | Maize | nucleus | 41.88 | 27.03 |
| AT1G32710.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 16.75 | 23.88 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | EntrezGene:838851 | UniProt:A0A178WPQ4 | ProteinID:AAF18532.1 | EMBL:AB035444 |
| ProteinID:AEE30243.1 | ArrayExpress:AT1G22450 | EnsemblPlantsGene:AT1G22450 | RefSeq:AT1G22450 | TAIR:AT1G22450 | RefSeq:AT1G22450-TAIR-G |
| EnsemblPlants:AT1G22450.1 | TAIR:AT1G22450.1 | EMBL:AY063997 | EMBL:AY086483 | EMBL:AY096696 | Unigene:At.10491 |
| Symbol:COX6B | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 |
| GO:GO:0009651 | GO:GO:0016020 | InterPro:IPR036549 | RefSeq:NP_173661.1 | ProteinID:OAP19503.1 | PFAM:PD015172 |
| PFAM:PF02297 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | UniProt:Q9S7L9 | SUPFAM:SSF47694 |
| UniParc:UPI000009C9E5 | SEG:seg | : | : | : | : |
Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
Coordinates
chr1:+:7925121..7927345
Molecular Weight (calculated)
21195.7 Da
IEP (calculated)
3.991
GRAVY (calculated)
-0.958
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.