Factsheet for PGSC0003DMT400045783

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g057120.1.1	Tomato	plastid	87.3	92.7
CDX91679	Canola	cytosol, nucleus, plastid	42.33	70.18
CDY41480	Canola	cytosol, mitochondrion, nucleus	43.39	69.49
PGSC0003DMT400079179	Potato	nucleus	64.55	65.95
PGSC0003DMT400029025	Potato	mitochondrion	31.75	63.83
CDY04815	Canola	nucleus	48.68	56.44
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	48.15	56.17
CDY71646	Canola	cytosol, nucleus, plastid	48.15	56.17
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	51.32	55.43
KXG36718	Sorghum	nucleus	49.74	54.97
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	48.15	54.17
TraesCS2A01G164000.1	Wheat	mitochondrion	44.97	54.14
TraesCS2D01G171000.1	Wheat	golgi	46.03	53.7
TraesCS2B01G189900.1	Wheat	golgi	45.5	53.09
KRH72388	Soybean	endoplasmic reticulum	48.68	52.87
HORVU2Hr1G029990.1	Barley	plasma membrane	46.56	52.69
Zm00001d029393_P001	Maize	plastid	47.09	51.74
Os03t0390400-01	Rice	mitochondrion	46.03	51.48
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	51.85	51.31
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	46.56	51.16
CDY00453	Canola	cytosol, nucleus, plastid	49.74	50.81
CDY46649	Canola	cytosol, nucleus, plastid	49.21	50.27
GSMUA_Achr8P17630_001	Banana	nucleus	45.5	49.14
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	46.03	36.4
VIT_13s0067g03800.t01	Wine grape	mitochondrion	44.97	35.42
Zm00001d047218_P002	Maize	nucleus	43.39	27.7

Protein Annotations

Gene3D:1.10.10.140	EntrezGene:102594500	MapMan:2.4.5.1.7	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR036549	UniProt:M1BI72
PFAM:PD015172	PFAM:PF02297	EnsemblPlantsGene:PGSC0003DMG401017754	PGSC:PGSC0003DMG401017754	EnsemblPlants:PGSC0003DMT400045783	PFscan:PS51808
PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI0002958E79	RefSeq:XP_015170251.1	SEG:seg

Description

Cytochrome C oxidase polypeptide vib [Source:PGSC_GENE;Acc:PGSC0003DMG401017754]

Coordinates

chr12:+:55428334..55431455

Molecular Weight (calculated)

20953.3 Da

IEP (calculated)

3.947

GRAVY (calculated)

-1.074

Length

189 amino acids

Sequence
(BLAST)

001: MAEVDNSKSP SLSEQYLLKE KEEKSTTVAN PVEEIEVKTS STAPSEEDTP KTEETPAVES SEAVPATYEE SSGASDSTAP EINEASPPVE ADGEESTEDD
101: TSENENQESA DETPEIKLET APADFRFPTT NQTRHCFTRY IEYHRCIAAK GEGAPECDKF AKYYRSLCPG EWIDRWNEQR ENGTFPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.