Factsheet for Bra031391.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71646	Canola	cytosol, nucleus, plastid	100.0	100.0
Bra024231.1-P	Field mustard	cytosol	36.42	75.64
Bra026287.1-P	Field mustard	cytosol	35.8	74.36
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	69.14	58.64
TraesCS2A01G164000.1	Wheat	mitochondrion	52.47	54.14
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	57.41	54.07
Zm00001d029393_P001	Maize	plastid	56.79	53.49
TraesCS2D01G171000.1	Wheat	golgi	53.09	53.09
TraesCS2B01G189900.1	Wheat	golgi	53.09	53.09
Os03t0390400-01	Rice	mitochondrion	54.32	52.07
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	56.17	52.0
HORVU2Hr1G029990.1	Barley	plasma membrane	52.47	50.9
Solyc12g057120.1.1	Tomato	plastid	55.56	50.56
KRH72388	Soybean	endoplasmic reticulum	53.7	50.0
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	51.23	49.4
KXG36718	Sorghum	nucleus	51.85	49.12
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	56.17	48.15
GSMUA_Achr8P17630_001	Banana	nucleus	51.85	48.0
PGSC0003DMT400079179	Potato	nucleus	54.32	47.57
Solyc04g074550.2.1	Tomato	nucleus, plastid	53.7	47.03
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	53.7	36.4
VIT_13s0067g03800.t01	Wine grape	mitochondrion	51.85	35.0
Zm00001d047218_P002	Maize	nucleus	48.77	26.69
Bra035497.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.37	25.78

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	EnsemblPlantsGene:Bra031391	EnsemblPlants:Bra031391.1	EnsemblPlants:Bra031391.1-P	InterPro:Cyt_c_oxidase_su6B
InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009651	GO:GO:0016020
InterPro:IPR036549	UniProt:M4ERG7	PFAM:PD015172	PFAM:PF02297	PFscan:PS51808	PANTHER:PTHR11387
PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI0002547514	SEG:seg	:	:

Description

AT1G22450 (E=3e-043) COX6B, ATCOX6B2 | COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase

Coordinates

chrA05:-:15551349..15552603

Molecular Weight (calculated)

18320.5 Da

IEP (calculated)

3.985

GRAVY (calculated)

-1.085

Length

162 amino acids

Sequence
(BLAST)

001: MAESVSSQTP SLSEQYHLEK EVKPVEVAPE VTTTQAEEVE TKEDSPSEEA VEDKSESPEV PSEEAPAAAE ENNEENTTEE VAEETPDEIK LETAPADFRF
101: PTTNQTRHCF TRYIEYHRCV SAKGDDAPEC DKFSKFYRSL CPGEWVDRWN EQRENGTFPG PL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.