Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29877 | Canola | cytosol | 100.0 | 100.0 |
| Bra026287.1-P | Field mustard | cytosol | 96.15 | 96.15 |
| AT4G28060.1 | Thale cress | mitochondrion | 94.87 | 94.87 |
| Solyc07g006270.2.1 | Tomato | cytosol | 82.05 | 83.12 |
| KRH18933 | Soybean | cytosol | 82.05 | 83.12 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 78.21 | 79.22 |
| Os04t0498200-01 | Rice | cytosol | 78.21 | 79.22 |
| OQU85293 | Sorghum | cytosol | 78.21 | 79.22 |
| GSMUA_Achr3P04880_001 | Banana | cytosol | 75.64 | 76.62 |
| KRH02965 | Soybean | cytosol | 80.77 | 72.41 |
| PGSC0003DMT400029025 | Potato | mitochondrion | 82.05 | 68.09 |
| HORVU7Hr1G032110.2 | Barley | cytosol | 55.13 | 59.72 |
| HORVU5Hr1G020140.1 | Barley | cytosol | 55.13 | 58.9 |
| HORVU2Hr1G085960.3 | Barley | cytosol | 57.69 | 52.94 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 75.64 | 36.42 |
| Zm00001d051055_P003 | Maize | mitochondrion | 58.97 | 30.67 |
| Bra035497.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 41.03 | 25.0 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | EnsemblPlantsGene:Bra024231 | EnsemblPlants:Bra024231.1 | EnsemblPlants:Bra024231.1-P | InterPro:Cyt_c_oxidase_su6B |
| InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| InterPro:IPR036549 | UniProt:M4E627 | PFAM:PD015172 | PFAM:PF02297 | PIRSF:PIRSF000278 | PFscan:PS51808 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 | UniParc:UPI0002540BAA | : | : |
Description
AT5G57815 (E=5e-043) | cytochrome c oxidase subunit 6b, putative
Coordinates
chrA03:-:26757454..26758332
Molecular Weight (calculated)
9225.7 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.928
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MEDEIDLKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EDSVDCERFA KYYRALCPGE WVDKWNEQRE TGTFPGPL
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EESNDCERFA KYYRALCPGE WVDKWNEQRE SGTFPGPL
Arabidopsis Description
COX6B-2Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UHL9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.