Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0498200-01 | Rice | cytosol | 85.71 | 85.71 |
| Solyc07g006270.2.1 | Tomato | cytosol | 84.42 | 84.42 |
| OQU85293 | Sorghum | cytosol | 84.42 | 84.42 |
| KRH18933 | Soybean | cytosol | 84.42 | 84.42 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 80.52 | 80.52 |
| CDX89207 | Canola | cytosol | 77.92 | 76.92 |
| Bra026287.1-P | Field mustard | cytosol | 77.92 | 76.92 |
| AT5G57815.1 | Thale cress | cytosol | 77.92 | 76.92 |
| CDY29877 | Canola | cytosol | 76.62 | 75.64 |
| AT4G28060.1 | Thale cress | mitochondrion | 76.62 | 75.64 |
| Bra024231.1-P | Field mustard | cytosol | 76.62 | 75.64 |
| KRH02965 | Soybean | cytosol | 81.82 | 72.41 |
| PGSC0003DMT400029025 | Potato | mitochondrion | 80.52 | 65.96 |
| HORVU7Hr1G032110.2 | Barley | cytosol | 59.74 | 63.89 |
| HORVU5Hr1G020140.1 | Barley | cytosol | 57.14 | 60.27 |
| CDY19008 | Canola | extracellular | 76.62 | 60.2 |
| HORVU2Hr1G085960.3 | Barley | cytosol | 62.34 | 56.47 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 81.82 | 37.5 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 81.82 | 36.0 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 77.92 | 34.29 |
| Zm00001d051055_P003 | Maize | mitochondrion | 61.04 | 31.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P04880_001 | EnsemblPlants:GSMUA_Achr3T04880_001 | EnsemblPlantsGene:GSMUA_Achr3G04880_001 | Gene3D:1.10.10.140 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | InterPro:IPR036549 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PIRSF:PIRSF000278 |
| SUPFAM:SSF47694 | UniParc:UPI00029491EA | UniProt:M0SBV6 | MapMan:2.4.5.1.7 | : | : |
Description
Cytochrome c oxidase subunit 6B [Source:GMGC_GENE;Acc:GSMUA_Achr3G04880_001]
Coordinates
chr3:+:3141438..3145122
Molecular Weight (calculated)
9013.6 Da
IEP (calculated)
7.952
GRAVY (calculated)
-0.839
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEIELKTAP ADFRFPTTNQ TRHCFTRYIE YHKCVAAKGE ETPDCHKFAK YYRSLCPGEW VEKWNEQRAN GTFPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.