Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026287.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY29877 | Canola | cytosol | 96.15 | 96.15 |
| AT4G28060.1 | Thale cress | mitochondrion | 94.87 | 94.87 |
| KRH18933 | Soybean | cytosol | 84.62 | 85.71 |
| Solyc07g006270.2.1 | Tomato | cytosol | 83.33 | 84.42 |
| Os04t0498200-01 | Rice | cytosol | 79.49 | 80.52 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 78.21 | 79.22 |
| OQU85293 | Sorghum | cytosol | 78.21 | 79.22 |
| GSMUA_Achr3P04880_001 | Banana | cytosol | 76.92 | 77.92 |
| KRH02965 | Soybean | cytosol | 83.33 | 74.71 |
| CDY19008 | Canola | extracellular | 92.31 | 73.47 |
| PGSC0003DMT400029025 | Potato | mitochondrion | 83.33 | 69.15 |
| HORVU7Hr1G032110.2 | Barley | cytosol | 56.41 | 61.11 |
| HORVU5Hr1G020140.1 | Barley | cytosol | 56.41 | 60.27 |
| HORVU2Hr1G085960.3 | Barley | cytosol | 58.97 | 54.12 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 75.64 | 51.75 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 75.64 | 50.0 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 97.44 | 43.43 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 74.36 | 35.8 |
| CDY04815 | Canola | nucleus | 74.36 | 35.58 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 74.36 | 31.35 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 74.36 | 31.35 |
| Zm00001d051055_P003 | Maize | mitochondrion | 58.97 | 30.67 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 41.03 | 25.0 |
Protein Annotations
| EnsemblPlants:CDX89207 | EnsemblPlantsGene:GSBRNA2T00149389001 | Gene3D:1.10.10.140 | GO:A0A078DJX3 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | InterPro:IPR036549 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PIRSF:PIRSF000278 |
| ProteinID:CDX89207 | ProteinID:CDX89207.1 | SUPFAM:SSF47694 | UniParc:UPI0002543F2F | MapMan:2.4.5.1.7 | : |
Description
BnaA01g16860D
Coordinates
chrLK031858:+:137239..138393
Molecular Weight (calculated)
9226.7 Da
IEP (calculated)
5.708
GRAVY (calculated)
-0.992
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG ENSSDCERFA KYYRALCPGE WVDKWNEQRE TGTFPGPL
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EESNDCERFA KYYRALCPGE WVDKWNEQRE SGTFPGPL
Arabidopsis Description
COX6B-2Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UHL9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.