Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 91.23 | 88.14 |
| CDY29877 | Canola | cytosol | 52.63 | 76.92 |
| CDX89207 | Canola | cytosol | 51.75 | 75.64 |
| CDY19008 | Canola | extracellular | 50.88 | 59.18 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 81.58 | 57.41 |
| CDY04815 | Canola | nucleus | 81.58 | 57.06 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 83.33 | 49.74 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 80.7 | 49.73 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 80.7 | 49.73 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 66.67 | 48.41 |
| Os03t0390400-01 | Rice | mitochondrion | 70.18 | 47.34 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 71.05 | 47.09 |
| TraesCS2D01G171000.1 | Wheat | golgi | 66.67 | 46.91 |
| TraesCS2B01G189900.1 | Wheat | golgi | 66.67 | 46.91 |
| Zm00001d029393_P001 | Maize | plastid | 70.18 | 46.51 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 67.54 | 45.83 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 66.67 | 45.51 |
| KXG36718 | Sorghum | nucleus | 66.67 | 44.44 |
| Solyc12g057120.1.1 | Tomato | plastid | 69.3 | 44.38 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 66.67 | 43.43 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 66.67 | 43.43 |
| KRH72388 | Soybean | endoplasmic reticulum | 65.79 | 43.1 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 70.18 | 42.33 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 67.54 | 41.62 |
| PGSC0003DMT400079179 | Potato | nucleus | 67.54 | 41.62 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 56.14 | 36.57 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 66.67 | 31.8 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 64.04 | 30.42 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 28.95 | 25.78 |
| Zm00001d047218_P002 | Maize | nucleus | 62.28 | 23.99 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | GO:A0A078DT65 | EnsemblPlants:CDX91679 | ProteinID:CDX91679 | ProteinID:CDX91679.1 |
| InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | EnsemblPlantsGene:GSBRNA2T00153147001 | InterPro:IPR036549 | PFAM:PD015172 | PFAM:PF02297 | PIRSF:PIRSF000278 |
| PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 | UniParc:UPI0004EF2BD6 | SEG:seg |
Description
BnaC08g05980D
Coordinates
chrLK031869:+:130625..131758
Molecular Weight (calculated)
13182.0 Da
IEP (calculated)
4.335
GRAVY (calculated)
-0.992
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAVSAQTP SLSEQYHLEN EVKQVKESPE ESSEEETTDE ITLETAPADF RFPTTNQTRH CFTRYIEYHR CVAAKGDDAP ECDKFAKFYR SLCPSEWVDR
101: WNEQRENGTF PGPL
101: WNEQRENGTF PGPL
001: MSSAQMDPHD KMRSRDISKV ARGQQAPRPA HTPGTVSPPP ENEATFRAKR GDSGRETDAA VEERFPVTNE TRHCFNRFMQ YHKCIEKNGR DANDCNNLRD
101: YVRSICPEEL VSKIWLKSGR NKESQGHYQR QYED
101: YVRSICPEEL VSKIWLKSGR NKESQGHYQR QYED
Arabidopsis Description
Putative cytochrome c oxidase subunit 6b-like [Source:UniProtKB/Swiss-Prot;Acc:Q9LPJ2]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.