Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85293 | Sorghum | cytosol | 37.79 | 84.42 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 47.09 | 71.05 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 47.67 | 69.49 |
| Os03t0390400-01 | Rice | mitochondrion | 68.02 | 69.23 |
| KXG36718 | Sorghum | nucleus | 65.12 | 65.5 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 54.07 | 57.41 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 54.07 | 57.41 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 57.56 | 56.57 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 53.49 | 54.76 |
| CDY04815 | Canola | nucleus | 51.74 | 54.6 |
| KRH72388 | Soybean | endoplasmic reticulum | 54.07 | 53.45 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 53.49 | 52.57 |
| Solyc12g057120.1.1 | Tomato | plastid | 52.91 | 51.12 |
| PGSC0003DMT400079179 | Potato | nucleus | 53.49 | 49.73 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 53.49 | 49.73 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 53.49 | 48.17 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 51.16 | 46.56 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 50.0 | 46.49 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 49.42 | 45.95 |
| Zm00001d047218_P002 | Maize | nucleus | 64.53 | 37.5 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.67 | 34.31 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 45.93 | 32.92 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | UniProt:A0A1B6QMT0 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004129 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:IPR036549 | EnsemblPlants:KXG39229 | ProteinID:KXG39229 | ProteinID:KXG39229.1 |
| PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | EnsemblPlantsGene:SORBI_3001G350600 |
| SUPFAM:SSF47694 | UniParc:UPI0001C80B6A | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:64028071..64032243
Molecular Weight (calculated)
19068.2 Da
IEP (calculated)
3.995
GRAVY (calculated)
-1.107
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEAKTPSL AEEYSLPPQE VAVEKAAEEK PSSGTETEAA PSTNDEAPPS VEDKNETSEV QDTAEKSEAE ETNTAAEETP AAEEASETTE EEEAEKPEIK
101: IETAPADFRF PTTNQTRHCF TRYVEYHRCV AAKGEDAPEC DKFAKYYRSL CPGEWVDRWN EQRENGTFPG PL
101: IETAPADFRF PTTNQTRHCF TRYVEYHRCV AAKGEDAPEC DKFAKYYRSL CPGEWVDRWN EQRENGTFPG PL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.